View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5879_high_3 (Length: 594)
Name: NF5879_high_3
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5879_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 10333535 - 10332970
Alignment:
| Q |
1 |
ttaagatgattactcatgaacttggtcaccatttcaactgaatagcgaatattcggtttgctttgacatagatacgtaccttagtgatccaataagcttc |
100 |
Q |
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| T |
10333535 |
ttaagatgattactcatgaacttggtcaccatttcaactgaatagcgaatattcggtctgctttgacatagatac----cttagcgattcaataagcttc |
10333440 |
T |
|
| Q |
101 |
ctgaatagttttggatcaacactttcttatttttcgtttacttcatttctgatattaatatatgttggagtggtagctgaattgcaatccaacatattga |
200 |
Q |
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| T |
10333439 |
atgaatagtgttggatcaacactttcttctttttctttcacttcatttatgatattaatat--gtt--agtggtagctgaattgcaatccaacatattga |
10333344 |
T |
|
| Q |
201 |
tccagatattgaacct-ttcagaatctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgc |
299 |
Q |
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| T |
10333343 |
------------acctcttcaggatctcagtagcatacttggtctgatgaagtatcaagccttttgaggttctgagaatctctattcctaagaaatatgc |
10333256 |
T |
|
| Q |
300 |
aagatt-cctagaccagccatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccaca |
398 |
Q |
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||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
10333255 |
aagctttcctagaccaatcatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaatttatcttccagtcaacataaaatcatccaca |
10333156 |
T |
|
| Q |
399 |
tacaagcatacgataagtaaactagtctcttctcttccttttacatacactccatgctcaacaatgcatttcttaaatccttctttcttaaagcatttgt |
498 |
Q |
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| T |
10333155 |
tacaagcatacgataagtaaactagtctcttctcttccttttacatacactccatgctcaacaatgcatttcttaaatccttctttcttaaagcatttgt |
10333056 |
T |
|
| Q |
499 |
caannnnnnnattctaggccctaggttctcatttcaagctatatagagccttgtttagtttgaacactctatcttctttccctttg |
584 |
Q |
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| T |
10333055 |
caatttttttattctaggccctaggttctcatttcaagctatatagagccttgtttagtttgaacactctatcttctttccctttg |
10332970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 223 - 402
Target Start/End: Complemental strand, 33685066 - 33684886
Alignment:
| Q |
223 |
atctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgcaagatt-cctagaccagccattt |
321 |
Q |
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|||||| ||||||| ||||| ||||| |||||||| || ||||||||| | ||||| ||||| | ||| ||||||||||| || |||| | ||| ||||| |
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| T |
33685066 |
atctcaatagcatatttggtttgatggagtatcaatccctttgaggttctaagaatttccatgcctaataaatatgcaagcttacctaaatcagtcattt |
33684967 |
T |
|
| Q |
322 |
caaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccacataca |
402 |
Q |
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| T |
33684966 |
caaactcagactttatgactgatttgaaatctttaatgtcttacatgttgcttccagttagcataagatcatctacataca |
33684886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 223 - 402
Target Start/End: Complemental strand, 33702120 - 33701940
Alignment:
| Q |
223 |
atctcagtagcatacttggtctgatgaagtatcaagccttttgaggttttgagaatctccattcgtaagaaatatgcaagatt-cctagaccagccattt |
321 |
Q |
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|||||| ||||||| ||||| ||||| |||||||| || ||||||||| | ||||| ||||| | ||| ||||||||||| || |||| | ||| ||||| |
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| T |
33702120 |
atctcaatagcatatttggtttgatggagtatcaatccctttgaggttctaagaatttccatgcctaataaatatgcaagcttacctaaatcagtcattt |
33702021 |
T |
|
| Q |
322 |
caaattctgacttcatgactgatttaaactcttcaatatcttgaactttgcttccagtcaacataaaatcatccacataca |
402 |
Q |
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|||| || ||||| ||||||||||| || |||| ||| |||| | ||||||||||| | ||||| |||||| ||||||| |
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| T |
33702020 |
caaactcagactttatgactgatttgaaatctttaatgtcttacatgttgcttccagttagcataagatcatctacataca |
33701940 |
T |
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