View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5879_low_1 (Length: 908)
Name: NF5879_low_1
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5879_low_1 |
 | |
|
| [»] scaffold0003 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 792; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 792; E-Value: 0
Query Start/End: Original strand, 72 - 895
Target Start/End: Complemental strand, 24495421 - 24494598
Alignment:
| Q |
72 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24495421 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24495322 |
T |
|
| Q |
172 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatacta |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24495321 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatacta |
24495222 |
T |
|
| Q |
272 |
gtatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatg |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495221 |
gtatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatg |
24495122 |
T |
|
| Q |
372 |
acgttgcctagacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttttatttctcacatgatctctgaca |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24495121 |
acgttgcctagacagaggtttggtgaggcaatctgatagatgatctatagtggaaacatgttgaacccgaatctttttatttctcacatgatctctgaca |
24495022 |
T |
|
| Q |
472 |
aaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaatag |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24495021 |
aaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccaagattgtcacagtagatggtaggaatag |
24494922 |
T |
|
| Q |
572 |
tgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatct |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494921 |
tgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatct |
24494822 |
T |
|
| Q |
672 |
tgcaacggctttttgtttaaaagacttccaagaaattgggttaccaccataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcc |
771 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494821 |
tgcaacggctttttgtttaaaagacttccaagaaattgggttaccaccataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcc |
24494722 |
T |
|
| Q |
772 |
caatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttca |
871 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24494721 |
caatcggcatcactgaatgcataaagattttgagaagaagtgtgcttcaagtgaagtccatgaaacatggtggctttgagatatcaaagaagtcttttca |
24494622 |
T |
|
| Q |
872 |
aggatgtaaagtgtgtagatgatg |
895 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
24494621 |
aggctgtaaagtgtgtagatgatg |
24494598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 72 - 312
Target Start/End: Complemental strand, 24491863 - 24491623
Alignment:
| Q |
72 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24491863 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24491764 |
T |
|
| Q |
172 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatacta |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24491763 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatacta |
24491664 |
T |
|
| Q |
272 |
gtatctcttaatttaaaagccttggtcctgtaaccttaaca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24491663 |
gtatctcttaatttaaaagccttggtcctgtaaccttaaca |
24491623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 120 - 265
Target Start/End: Complemental strand, 2810371 - 2810226
Alignment:
| Q |
120 |
tcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataattgcttcctacagctatggtttgactttctctaatcaattacagtgtga |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2810371 |
tcacaaggtatattggtacaatatatagaaacatatttgttgtcctaataattgcttcctagagctatggtttgactttctctaatcaattacagtgtga |
2810272 |
T |
|
| Q |
220 |
tattatttcttgatcacagaataactctcatcttaaatgcttaata |
265 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
2810271 |
tattatttcttaatcacagaataactctcgtctaaaatgcttaata |
2810226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 2810071 - 2810031
Alignment:
| Q |
273 |
tatctcttaatttaaaagccttggtcctgtaaccttaacac |
313 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2810071 |
tatctcttaatttaaaagccttggtcttgtaaccttaacac |
2810031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 72 - 632
Target Start/End: Original strand, 18556573 - 18557131
Alignment:
| Q |
72 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
171 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18556573 |
tataaggaataatgatatgtatggaataatgattttt-gctatatcattcacaaggtatattggtacaatatatagaaacatatttgctgtcctaataat |
18556671 |
T |
|
| Q |
172 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatacta |
271 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
18556672 |
tgcttcctccagctatggtttgactttctctagtcaattatagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaatactagaa |
18556771 |
T |
|
| Q |
272 |
gtatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatg |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18556772 |
-tatctcttaatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcatatacgcctatcttgaaacgaagatcttgatg |
18556870 |
T |
|
| Q |
372 |
acgttgcctagacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttttatttctcacatgatctctgaca |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18556871 |
acgttgcctagacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttttatttctgacatgatctctgaca |
18556970 |
T |
|
| Q |
472 |
aaatgaatatctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaatag |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18556971 |
aaatgaatatctatggcaatgtgcttcatgcgactatggaagaggggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaatag |
18557070 |
T |
|
| Q |
572 |
tgggtaaactgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgc |
632 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18557071 |
tgggtaaactaacatgaagttcagagagaagtgatgacaaccagagaacttctgcggatgc |
18557131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 281 - 721
Target Start/End: Complemental strand, 86677 - 86237
Alignment:
| Q |
281 |
aatttaaaagccttggtcctgtaaccttaacacgcccccgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttgcct |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86677 |
aatttaaaagccttggtcctgtaaccttaacacgcccctgcaagataggggtaccgtcagatacgcctatcttgaaacgaagatcttgatgacgttgcct |
86578 |
T |
|
| Q |
381 |
agacagaggtttggtgaggcaatctgctagctgatctttagtggaaacatgttgaacccgaatctttttatttctcacatgatctctgacaaaatgaata |
480 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
86577 |
agacagaggtttggtgaggcaatctgttagctgatctgtagtggaaacatgttgaacccgaatctttttatttctgacatgatctctaacaaaatgaata |
86478 |
T |
|
| Q |
481 |
tctatggcaatgtgcttcatgcgactatggaagacgggattgacagtgagataagtggcaccgagattgtcacagtagatggtaggaatagtgggtaaac |
580 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
86477 |
tctatggcagtatgcttcatgcgactatggaagacgggattgatagtgagatacgtggcaccgagattgtcacagtagatggtaggaatagttggtaaac |
86378 |
T |
|
| Q |
581 |
tgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacggc |
680 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
86377 |
tgacatgaagttcagagagaagtgatgacaaccagagaacttctgcggatgcgtatgctagagctctgtattcagcttcagtggatgatcttgcaacaaa |
86278 |
T |
|
| Q |
681 |
tttttgtttaaaagacttccaagaaattgggttaccaccat |
721 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86277 |
tttttgtttaaaagacttccaagaaattgggttaccaccat |
86237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 71 - 297
Target Start/End: Complemental strand, 86922 - 86693
Alignment:
| Q |
71 |
gtataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataa |
170 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86922 |
gtataaggaataatgatatataaggaataatgattttt-gctatatcattcacaaggtattttggcacaatatatagaaacatatttgctgtcctaataa |
86824 |
T |
|
| Q |
171 |
ttgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataata-- |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
86823 |
ttgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaatactaga |
86724 |
T |
|
| Q |
269 |
--ctagtatctcttaatttaaaagccttggt |
297 |
Q |
| |
|
|| |||| |||||||||||||||||||| |
|
|
| T |
86723 |
atataatatcacttaatttaaaagccttggt |
86693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 717 - 895
Target Start/End: Complemental strand, 94126 - 93948
Alignment:
| Q |
717 |
accataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgc |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
94126 |
accataaaatgtaacatgtgcagaggtggatgtataatcatctcgatttccagcccaatcggcatcactgaatgcatatagattttgagaagaagtgcac |
94027 |
T |
|
| Q |
817 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggatgtaaagtgtgtagatgatg |
895 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
94026 |
ttcaagtgaagtccatgaaacatggtggctttgagatatcgaagaagtcttttcaaggttgtaaagtgtgtagatgatg |
93948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 72 - 312
Target Start/End: Complemental strand, 24359176 - 24358936
Alignment:
| Q |
72 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgctgtcctaataat |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24359176 |
tataaggaataatgatatgtaaggaataatgattttttgctatatcattcacaaggtatattggcacaatatatagaaacatatttgttgtcctaataat |
24359077 |
T |
|
| Q |
172 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagaataactctcatcttaaatgcttaataatacta |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24359076 |
tgcttcctacagctatggtttgactttctctaatcaattacagtgtgatattatttcttgatcacagattaactctcatcttaaatgcttaataatacta |
24358977 |
T |
|
| Q |
272 |
gtatctcttaatttaaaagccttggtcctgtaaccttaaca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24358976 |
gtatctcttaatttaaaagccttggtcctgtaaccttaaca |
24358936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 22684958 - 22684888
Alignment:
| Q |
1 |
gaatcccagtttaccttaaacatgcccaaaaagttatatgcatcacagatagcaatttggacaactgtaag |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22684958 |
gaatcccagtttaccttaaacatgcccaaagagttatatgcatcacagatagcaatttggacaactgtaag |
22684888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 22697081 - 22697011
Alignment:
| Q |
1 |
gaatcccagtttaccttaaacatgcccaaaaagttatatgcatcacagatagcaatttggacaactgtaag |
71 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
22697081 |
gaatcccagtttaccttaaacatgcccaaagagttatatgcatcaaagatagcaacttggacaactgtaag |
22697011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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