View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5879_low_11 (Length: 257)
Name: NF5879_low_11
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5879_low_11 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 24554982 - 24555222
Alignment:
| Q |
17 |
agtaatatcgttaccggtaccgatcttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactc |
116 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24554982 |
agtaacatcgttaccggtaccgatcttgagatcgagttcattaacaagccagattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactc |
24555081 |
T |
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| Q |
117 |
aactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaattttgaaacatggatctggtaatgctta |
216 |
Q |
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| T |
24555082 |
aactaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaattttgaaacatggatctggtaatgctta |
24555181 |
T |
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| Q |
217 |
tagggttggattttgtttggatacaacaggtgtttgtgctt |
257 |
Q |
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| T |
24555182 |
tagggttggattttgtttggatacaacaggtgattgtgctt |
24555222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 2930592 - 2930812
Alignment:
| Q |
18 |
gtaatatcgttaccggtaccgatcttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactca |
117 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||||| | || |||||||||||| ||||||||||| ||||| |
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| T |
2930592 |
gtaatatcttgaccggtaccgatcttgagatcgagttcactaaaaaggctgattgtgctgaagcatcaaaatggttgatgtttgttgatcataatactca |
2930691 |
T |
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| Q |
118 |
actaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaattttgaaacatggatctggtaatgcttat |
217 |
Q |
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| T |
2930692 |
actaagttgtgttggtattggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaatagtgaaacatggatctggtcatgtttat |
2930791 |
T |
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| Q |
218 |
agggttggattttgtttggat |
238 |
Q |
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| T |
2930792 |
aggcttggattttgtttggat |
2930812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 2917004 - 2917224
Alignment:
| Q |
18 |
gtaatatcgttaccggtaccgatcttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactca |
117 |
Q |
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|||||||| | || ||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||| || |||||||| ||||| |
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| T |
2917004 |
gtaatatcttgactggtaccgatcttgagattgagtttactaagaagcctgattgtgctgaatcatcaaaatggttgatgtttcttgatcataatactca |
2917103 |
T |
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| Q |
118 |
actaagttttgttggtattggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaattttgaaacatggatctggtaatgcttat |
217 |
Q |
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| T |
2917104 |
actaagttgtgttggtattggtggtgcaacaaactatcatggtatagaaacaataagtggcaaattcttaatagtgaaacatggatctggtcatgtttat |
2917203 |
T |
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| Q |
218 |
agggttggattttgtttggat |
238 |
Q |
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||| ||||||||||||||||| |
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| T |
2917204 |
aggcttggattttgtttggat |
2917224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 32 - 243
Target Start/End: Original strand, 24566700 - 24566917
Alignment:
| Q |
32 |
ggtaccgatcttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttg |
131 |
Q |
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| T |
24566700 |
ggtactgatcttgagattgagttcactacgaagcctgattgcgctaaatcgtcgaaatggtcgatgtttgttgatcatgacactcaactaagttttgtcg |
24566799 |
T |
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| Q |
132 |
gtattggtggtcctgcaaactatcctggtgtagaattaattagtggaaaatttttaattttga------aacatggatctggtaatgcttatagggttgg |
225 |
Q |
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| T |
24566800 |
gtattggtggttctgcgaacaatcctggtgtagaaacaaccagtggaaaatttttagtagtgaaacatcaacatggatctggtcatgcttataggattgg |
24566899 |
T |
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| Q |
226 |
attttgtttggatacaac |
243 |
Q |
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| T |
24566900 |
attttgtttggatacaac |
24566917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 160
Target Start/End: Original strand, 20475777 - 20475895
Alignment:
| Q |
42 |
ttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtgg |
141 |
Q |
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|||| ||||||||||| ||||||||| |||| | |||||| || ||||||||||| |||||||| ||| | |||| | || ||||||||||||||| |
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| T |
20475777 |
ttgatatcgagttcacaaagaagcctaattgcgttgaatcatcaaaatggttgatatttgttgatagtgttattcaaaaagcttgtgttggtattggtgg |
20475876 |
T |
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| Q |
142 |
tcctgcaaactatcctggt |
160 |
Q |
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| T |
20475877 |
tcctgaaaattatcctggt |
20475895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 20505583 - 20505699
Alignment:
| Q |
44 |
gagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtggtc |
143 |
Q |
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||||| |||||||| |||||||||||||||| |||||| || ||||||||||| || ||||| |||| | | | || || ||||||||||||||||| |
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| T |
20505583 |
gagattgagttcacaaagaagcctgattgtgttgaatcatcaaaatggttgatatttattgataatgttattaatatattttgtgttggtattggtggtc |
20505682 |
T |
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| Q |
144 |
ctgcaaactatcctggt |
160 |
Q |
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| T |
20505683 |
gagaaaactatcctggt |
20505699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 20517691 - 20517723
Alignment:
| Q |
125 |
tttgttggtattggtggtcctgcaaactatcct |
157 |
Q |
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| T |
20517691 |
tttgttggtattggtggtcctgaaaactatcct |
20517723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 13072369 - 13072251
Alignment:
| Q |
42 |
ttgagatcgagttcactaagaagcctgattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtgg |
141 |
Q |
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|||| ||||||||| || |||||||||||||| ||||||||| ||||||||||| |||||||| |||| | |||| | || ||||||||||||||| |
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| T |
13072369 |
ttgatatcgagttcgttaggaagcctgattgtgttgaatcttcaaaatggttgatatttgttgataatgttattcaaaaatcttgtgttggtattggtgg |
13072270 |
T |
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| Q |
142 |
tcctgcaaactatcctggt |
160 |
Q |
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||| | ||||||||||||| |
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| T |
13072269 |
tccagaaaactatcctggt |
13072251 |
T |
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