View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5879_low_13 (Length: 250)
Name: NF5879_low_13
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5879_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 10332935 - 10332693
Alignment:
| Q |
1 |
agtagccatgctttgcttgttgctatactacaatgactaacctgatggtttcatgtcatgcaactggtgagaaaactttagtatagttaaatccttcctt |
100 |
Q |
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| T |
10332935 |
agtagccatgctttgcttgttgctatactacaatgactaacctgatggtttcatgtcatgcaactggtgagaaaactttagtatagttaaatccttcctt |
10332836 |
T |
|
| Q |
101 |
ccataagaattctttagctacaagcctggctttgtgcttcacaatcttcccttcaaggttcaatttcagcttaaaaacccattttaaatcaattgctttc |
200 |
Q |
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| T |
10332835 |
ccataagaattctttagctacaagcctggctttgtgcttcacaatcttcccttcaaggttcaatttcagcttaaaaacccatttgaaatcaattgctttc |
10332736 |
T |
|
| Q |
201 |
tttccaccaggaagcttgatcagttccatgtttgattcttctc |
243 |
Q |
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| T |
10332735 |
tttccaccaggaagcttgattagttccatgtttgattcttctc |
10332693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 6372497 - 6372642
Alignment:
| Q |
59 |
tgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttcacaatcttcccttcaagg |
158 |
Q |
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| T |
6372497 |
tgcaattggtgagaaaacttcagtgtaatcaaagccttcattctataagaaacctctagccacaagtcttgctttttgattcacaatcttcccgtcaggg |
6372596 |
T |
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| Q |
159 |
ttcaatttcagcttaaaaacccattttaaatcaattgctttctttc |
204 |
Q |
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| T |
6372597 |
ttcaatttaaacttgaagacccatttgacatctattgctttctttc |
6372642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 14639885 - 14639725
Alignment:
| Q |
42 |
ctgatggtttcatgtcatgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttca |
141 |
Q |
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|||||||||||||||| || |||||||||||| |||| |||||| | ||| ||||||||| ||||| || |||| ||||| || ||||||||||||| |
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| T |
14639885 |
ctgatggtttcatgtcttggaactggtgagaacacttcagtataatcaaagccttccttcttcaagaaaactctagccacaagtctagctttgtgcttca |
14639786 |
T |
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| Q |
142 |
caatcttcccttcaaggttcaatttcagcttaaaaacccattttaaatcaattgctttctt |
202 |
Q |
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| T |
14639785 |
caatcttcccttcaggattcaatttcaacttaaagacccatttaacatctattgctttctt |
14639725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 42 - 226
Target Start/End: Original strand, 12196483 - 12196666
Alignment:
| Q |
42 |
ctgatggtttcatgtcatgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttca |
141 |
Q |
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||||| |||||||||| |||| ||||||||||||||||||| || | ||| ||||||||| | || || || |||| | |||||| |||| ||| |||| |
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| T |
12196483 |
ctgatagtttcatgtcttgcatctggtgagaaaactttagtgtaatcaaaaccttccttcta-aataaacctctagccaaaagccttgcttcgtgattca |
12196581 |
T |
|
| Q |
142 |
caatcttcccttcaaggttcaatttcagcttaaaaacccattttaaatcaattgctttctttccaccaggaagcttgatcagttc |
226 |
Q |
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| T |
12196582 |
caatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttttttccatctcgaagctttatcagttc |
12196666 |
T |
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