View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5879_low_2 (Length: 732)
Name: NF5879_low_2
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5879_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 18 - 724
Target Start/End: Original strand, 7449002 - 7449708
Alignment:
| Q |
18 |
accttcactcactcttgttcatccaacacagttgagtagagcataagcaatgaagatccagtgtgatgtatgcaacaaaaatgaagcttcattattctgc |
117 |
Q |
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| T |
7449002 |
accttcactcactcttgttcatccaacacagttgagtagagcataagcaatgaagatccagtgtgatgtatgcaacaaaaatgaagcttcattattctgc |
7449101 |
T |
|
| Q |
118 |
accgccgatgaagccgccttatgtatcgactgtgaccaccgtgtccaccacgccaacaaactggcttccaaacaccaccgtctcgctcttcataacccaa |
217 |
Q |
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| T |
7449102 |
accgccgatgaagccgccttatgtatcgactgtgaccaccgtgtccaccacgccaacaaactggcttccaaacaccaccgtctcgctcttcataacccaa |
7449201 |
T |
|
| Q |
218 |
ctcccaaacaacaccctctctgcgatatttgtcaggtacatcaacttttattgacttaactttctcttatatttcgtatcagagttttgttgacttaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| ||||||||||||| |||||||||||||||||| | |
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| T |
7449202 |
ctcccaaacaacaccctctctgcgatatttgtcaggtacatcaattgttgttgacttaactttcttttatatttcgtataagagttttgttgacttaact |
7449301 |
T |
|
| Q |
318 |
ttttcttatagtcaggacgagagtaacatgttgacnnnnnnnncttatgttaggagagaagagcttttgtgttatgtaaacaagacagagcaattctatg |
417 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7449302 |
ttttcttatagtcaggacgagagtaacatgttgacttttttttcttatgttaggagagaagagcttttgtgttatgtaaacaagacagagcaattctatg |
7449401 |
T |
|
| Q |
418 |
caaagattgtgattcatctattcattcagtgaatgaacttacacaaaaacatgataggtttcttcttactggtattaagatttcaactacaaactcatct |
517 |
Q |
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| T |
7449402 |
caaagattgtgattcatctattcattcagtgaatgaacttacacaaaaacatgatagatttcttcttactggtattaagatttcaactacaaactcatct |
7449501 |
T |
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| Q |
518 |
tcttcatcttcatcatcaacaccttcttctgctactaccaagtcaaatcatgttccttcttcttctttgattgaaaaatctactactccttcaccaacat |
617 |
Q |
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| T |
7449502 |
tcttcatcttcatcatcaacaccttcttctgctactaccaagtcaaatcatattccttcttcttctttgattgaaaaatctactactccttcaccaacat |
7449601 |
T |
|
| Q |
618 |
ctatggaagaaggaagtggtggttctactatatctcaatacttgattgagactctacctggttggcaagttgatgattttcttgattcttcttctgttcc |
717 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7449602 |
ctatggaagaaggaagtggtggttctactatatctcaatacttgattgagactctacctggttggcaagttgatgattttcttgattcttcttctgttcc |
7449701 |
T |
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| Q |
718 |
ctttgct |
724 |
Q |
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||||||| |
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| T |
7449702 |
ctttgct |
7449708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 52823738 - 52823828
Alignment:
| Q |
103 |
gcttcattattctgcaccgccgatgaagccgccttatgtatcgactgtgaccaccgtgtccaccacgccaacaaactggcttccaaacacc |
193 |
Q |
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| T |
52823738 |
gcttctttattctgcaccgccgatgaagctgccttatgctccacctgcgaccaccgtgtccaccatgctaacaaactcgcctccaaacacc |
52823828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 24216182 - 24216217
Alignment:
| Q |
254 |
tacatcaacttttattgacttaactttctcttatat |
289 |
Q |
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| T |
24216182 |
tacatcaaattttattgacttaactttctcttatat |
24216217 |
T |
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