View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5879_low_4 (Length: 542)
Name: NF5879_low_4
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5879_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-135; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 24555218 - 24555470
Alignment:
| Q |
1 |
tgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttgattttgactgcaattgatgcttattctgttgtatttgttgatgctgct |
100 |
Q |
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| T |
24555218 |
tgcttatcttggattacaagagtttaattctggtgaaggtggatcacgtttgattttgactgcaattaatgcttattctgttgtatttgttgatgctgct |
24555317 |
T |
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| Q |
101 |
tctattaaatctggaaatagtgcaaatagtgcattacctatttagtatgggttttaatgaataagtggagtaattgtatttattcctttcttatgatgaa |
200 |
Q |
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| T |
24555318 |
tctattaaatctggaaatagtgcaaatagtgcattacctatttagtatgggttttaatgaataagtggagtaattgtatttattcctttcttatgatgaa |
24555417 |
T |
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| Q |
201 |
taattctacttgttttgatcaaagaagttgatcttgtattccattatcctatc |
253 |
Q |
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| T |
24555418 |
taattgtacttgttttgatcaaagaagttgatcttgtattccattatcctatc |
24555470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 284 - 493
Target Start/End: Original strand, 24555528 - 24555736
Alignment:
| Q |
284 |
aattaagactttgtccatgatttatgacataaagtgataaagttcgactttataactttaaagatattatttgaatcagcaatgctatatgtggcgagat |
383 |
Q |
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| T |
24555528 |
aattaagactttgtccatgatttatgacataaagtgataaagttcgactttataactttaaagatattatttgaatcagcaatgctata--tggcgagtt |
24555625 |
T |
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| Q |
384 |
aattcctcgcgaatcctcacgaatgaccatacagcttgtgctgtatgatttga-tcacaacatgtttaatctatcaaagacatagattaagtattaatca |
482 |
Q |
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| T |
24555626 |
aattcctcgtgaatccacacgaatgaccatacagtttgtgctatatgatcggattgacaacatgtttaatctatcaaagacatacattaagtataaatca |
24555725 |
T |
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| Q |
483 |
tatgcttgatc |
493 |
Q |
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| T |
24555726 |
tatgcttgatc |
24555736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 2917264 - 2917335
Alignment:
| Q |
26 |
aattctggtgaaggtggatcacgtttgattttgactgcaattgatgcttattctgttgtatttgttgatgct |
97 |
Q |
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| T |
2917264 |
aattctgaagaaggtggatcacgtttgtttttgactgcagttgatgcttattctgttgtatttgttgatgct |
2917335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 24566964 - 24567039
Alignment:
| Q |
38 |
ggtggatcacgtttgattttgactgcaattgatgcttattctgttgtatttgttgatgctgcttctattaaatctg |
113 |
Q |
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| T |
24566964 |
ggtggaccacgtttgatttttactgtgaatgatgcttattctgttgtttttgttgatgctgcttctattaaatctg |
24567039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 2930852 - 2930919
Alignment:
| Q |
26 |
aattctggtgaaggtggatcacgtttgattttgactgcaattgatgcttattctgttgtatttgttga |
93 |
Q |
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| T |
2930852 |
aattctgaagaaggtggatcacgtttgtttttgactgcaattgatgtttattctgttctatttgttga |
2930919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 24567047 - 24567088
Alignment:
| Q |
130 |
tgcattacctatttagtatgggttttaatgaataagtggagt |
171 |
Q |
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| T |
24567047 |
tgcattgcctatttagtatgagttgtaatgaataagtggagt |
24567088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 24555485 - 24555513
Alignment:
| Q |
267 |
gttgatcttgcatatttaattaagacttt |
295 |
Q |
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| T |
24555485 |
gttgatcttgcatatttaattaagacttt |
24555513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 421
Target Start/End: Complemental strand, 7998982 - 7998929
Alignment:
| Q |
368 |
ctatatgtggcgagataattcctcgcgaatcctcacgaatgaccatacagcttg |
421 |
Q |
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| T |
7998982 |
ctatatgtcgcgagaatattcctcgtgaatcctcacgaatgacaatacggcttg |
7998929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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