View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5879_low_6 (Length: 359)
Name: NF5879_low_6
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5879_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 40 - 353
Target Start/End: Original strand, 27430594 - 27430907
Alignment:
| Q |
40 |
ccttggaaaatcggtgtgcaagatcnnnnnnngcccatactttctccattgatgaccatcttccacaggacgatcagactccttctcccatgtttgtgaa |
139 |
Q |
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| T |
27430594 |
ccttggaaaatcggtgtgcaagatctttttttgcccatactttctccattgatgaccatcttccacaggacgatcagactccttctcccatgtttgtgaa |
27430693 |
T |
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| Q |
140 |
acttttctgaaaaataattacataattggataagttttctaattgtaccnnnnnnnctcaaaaccaagtaggactatgaaacaatcaaataattttactg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430694 |
acttttctgaaaaataattacataattggataagttttctaattgtaccaaaaaaactcaaaaccaagtaggactatgaaacaatcaaataattttactg |
27430793 |
T |
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| Q |
240 |
tgtcagccaaaaccataataactagaggaaacaacaaaataaataaaaatgagagggcataattacaacctagtcctttcatcacatgtagtggatatga |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430794 |
tgtcagccaaaaccataataactagaggaaacaacaaaataaataaaaatgagagggcataattacaacctagtcctttcatcacatgtagtggatatga |
27430893 |
T |
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| Q |
340 |
tgacaatgatgatg |
353 |
Q |
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|||||||||||||| |
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| T |
27430894 |
tgacaatgatgatg |
27430907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 27448560 - 27448668
Alignment:
| Q |
40 |
ccttggaaaatcggtgtgcaagatcnnnnnnngcccatactttctccattgatgaccatcttccacaggacgatcagactccttctcccatgtttgtgaa |
139 |
Q |
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||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||| |
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| T |
27448560 |
ccttggaaaatcggtgtgcaagatctttttttggccatactttctccactgatgaccatcttcttcaggctgttcagactccttctcccatgtttgtgaa |
27448659 |
T |
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| Q |
140 |
acttttctg |
148 |
Q |
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| T |
27448660 |
atttttctg |
27448668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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