View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5879_low_9 (Length: 274)
Name: NF5879_low_9
Description: NF5879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5879_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 11119693 - 11119442
Alignment:
| Q |
13 |
gtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaaggg |
112 |
Q |
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| T |
11119693 |
gtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatggtataaatgttgctgattttatcggggaacgaaagggaaaggg |
11119594 |
T |
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| Q |
113 |
tgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacacttt |
212 |
Q |
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| T |
11119593 |
tgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacacttt |
11119494 |
T |
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| Q |
213 |
aatgacagtgaagaagagaggatggctggggttgatgataggtttgatgatg |
264 |
Q |
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| T |
11119493 |
aatgacagtgaagaagagaggatggctggggttgatgataggtttgatgatg |
11119442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 12206175 - 12205970
Alignment:
| Q |
40 |
atgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaagggtgtagtggcggatgaagttgaaggcaa |
139 |
Q |
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| T |
12206175 |
atgttgaacctaaggtgaatttaggaaatgctataaatgttgctgatgttatcggggaacgaaagggaaagggtgtagtggcggattaagttgaaggcaa |
12206076 |
T |
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| Q |
140 |
tgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacactttaatgacagtgaagaagagaggatggct |
239 |
Q |
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| T |
12206075 |
tgttggtgaagcagacagtgatgatgaagatgttagtagtgatgatggtgattcaattaaaggcgcacactttaatgatagtgaagaagagaggatggct |
12205976 |
T |
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| Q |
240 |
ggggtt |
245 |
Q |
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| T |
12205975 |
ggggtt |
12205970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 32741397 - 32741144
Alignment:
| Q |
13 |
gtgataagaagtgtgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataaatgttgttgatgttatcggggaacgaaagggaaaggg |
112 |
Q |
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| T |
32741397 |
gtgataacaagtgcgatgttgaattgtatgttgaacctaaggtgaatttaggaaatgctataattgttgctgatgttattggggaacaaaagggaaaggg |
32741298 |
T |
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| Q |
113 |
tgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaatgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcacacacttt |
212 |
Q |
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| T |
32741297 |
tgtagtggcggatgaaattgaaggcgatgttggtgaagtagacatcgatggtggagatgttagtagtgatgatggtgatttaattaaaggcacacgcttt |
32741198 |
T |
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| Q |
213 |
aatgacagtgaagaagagaggatggctggggttgatgataggtttgatgatgtc |
266 |
Q |
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| T |
32741197 |
gatgatagtgaagaagagaagatggctgcggttgatgatgggtttgataatgtc |
32741144 |
T |
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