View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5880-Insertion-1 (Length: 901)

Name: NF5880-Insertion-1
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5880-Insertion-1
NF5880-Insertion-1
[»] chr1 (27 HSPs)
chr1 (8-901)||(6371877-6372771)
chr1 (360-808)||(6366679-6367125)
chr1 (369-788)||(6420485-6420904)
chr1 (360-700)||(6404029-6404370)
chr1 (373-704)||(6379084-6379416)
chr1 (369-669)||(6380297-6380598)
chr1 (398-703)||(6399345-6399650)
chr1 (369-668)||(6358785-6359085)
chr1 (367-668)||(6348741-6349043)
chr1 (369-669)||(6415328-6415629)
chr1 (367-700)||(6357409-6357743)
chr1 (360-669)||(6391044-6391354)
chr1 (377-691)||(6347660-6347975)
chr1 (398-710)||(6427853-6428165)
chr1 (19-108)||(6414276-6414368)
chr1 (13-111)||(6426923-6427021)
chr1 (19-103)||(6403348-6403432)
chr1 (30-108)||(6346865-6346943)
chr1 (14-66)||(6357832-6357884)
chr1 (19-108)||(6356364-6356456)
chr1 (14-73)||(6379501-6379560)
chr1 (14-103)||(6366076-6366168)
chr1 (19-73)||(6397201-6397255)
chr1 (232-283)||(6358279-6358327)
chr1 (19-73)||(6419691-6419745)
chr1 (558-632)||(6439622-6439696)
chr1 (398-507)||(6439461-6439570)


Alignment Details
Target: chr1 (Bit Score: 697; Significance: 0; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 8 - 901
Target Start/End: Original strand, 6371877 - 6372771
Alignment:
Q  8 aagaagatcacgggaggaagagatttactggatccattttcagttcatccatttcaccctatttctgagcaccacccattttcaacaataacttgttagt 107  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6371877 aagaagatcacgggaggaagagatttactggaaccattttcagttcatccatttcaccctatttctgagcaccacccattttcaacaacaacttgttagt 6371976  T
Q  108 attctttttgctctttctctttccttccattgttctaaatgaaagaaaaatgaaacttttctttattagggtgttgactattgagtacatgcacttcatc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6371977 attctttttgctctttctctttccttccattgttctaaatgaaagaaaaatgaaacttttctttattagggtgttgactattgagtacatgcacttcatc 6372076  T
Q  208 tcatgttcataannnnnnnn--atcattttacaattcctttaactgcacttattagttcttttgaacaaagttttcagcttttcagtttttagcttttcc 305  Q
    ||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6372077 tcatgttcataattttttttttatcattttacaattcctttaactgcacttattagttcttttgaacaaagttttcagcttttca-tttttagcttttcc 6372175  T
Q  306 tgtaaatcattgctgaaatcatgtacttgtgatgattaatagccgttttacaggcaatttatcttaatctcaaatggaaatttatacttttatgcaggca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6372176 tgtaaatcattgctgaaatcatgtacttgtgatgattaatagccgttttacaggcaatttatcttaatctcaaatggaaatttatacttttatgcaggca 6372275  T
Q  406 cttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaacta 505  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6372276 cttcctaaaacattctcagacaacttaaagaagaagttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggctgacaacta 6372375  T
Q  506 gaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatc 605  Q
    ||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6372376 gaaatgatactgtgtacttcatggacggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatc 6372475  T
Q  606 actctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagcttcttattttgttctagaatgcggacaagctcatactgaacaagggggc 705  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6372476 actctttgaggttttaatctttaatggagaaagcttatgtgagaaagcagcttcttattttgttctagaatgtggacaagctcatactgaacaagggggc 6372575  T
Q  706 aacaaaggaaagaattcaaacaannnnnnngaagaagttaatactccttcctaatggtggtgttgaatgtgcttcacctgag-aatttcggcgtcttaac 804  Q
    |||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    ||    
T  6372576 aacaaaggaaagaattcaaacaatttttttgaagaagtcaatactccttcctaatggtggtgttgaatgtgcttcacctgagaaatttcggcgt----ac 6372671  T
Q  805 agtacagacaccatttgctgtaccttt--gaactacc-acggaaagac-tttaatgctggcattg-atctgcct-ctcctagaaatgcatggctgatgca 898  Q
    |  |   ||||||||||||||||||||   ||||||| |||||||||| |||||||||||||||| |||||| | |||  ||||||||||||||||||||    
T  6372672 aaga---acaccatttgctgtaccttttgaaactaccaacggaaagacttttaatgctggcattgaatctgcttcctctaagaaatgcatggctgatgca 6372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 360 - 808
Target Start/End: Original strand, 6366679 - 6367125
Alignment:
Q  360 caatttatcttaatctcaaatggaaatttatacttttat-gcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgac 458  Q
    |||| ||||||| |||||| ||||||||||||  ||||| |||||| |||||||||| |||||| ||||| ||||||||||| |||||||||||||||||    
T  6366679 caatgtatcttagtctcaactggaaatttataaatttattgcaggcccttcctaaaatattctcggacaatttaaagaagaagttgccagaaaatgtgac 6366778  T
Q  459 ccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcat 558  Q
     ||||||||||||||||||||||| ||||||||||||||||  ||||||  |||  |||| ||| |||||||||||||||  || || |||||||||||     
T  6366779 acttaaaggtcctagtggagttgtgtggaatatagggctgaatactagaggtgaatctgtttatttcgtggacggttggcgacgtttcgtgaaagatcac 6366878  T
Q  559 tctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagctt 658  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||    
T  6366879 tctttgaaagagaatgatttccttgtctttaagtacaacggtgaatcactctttgaggttttaatctttaatggagaaagcttctgtgaaaaagcagctt 6366978  T
Q  659 cttattttgttctagaatgcggacaagctcatactgaacaagggggcaacaaaggaaagaattcaaacaannnnnnngaagaagttaatactccttccta 758  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||       |||||||| |||||    | |||    
T  6366979 cttattttgttctagaatgtggacaagctcatgctgaacaagggggtaacaaaggaaagaattcaaacaaatctgttgaagaagtcaatac----tacta 6367074  T
Q  759 atggtggtgttgaatgtgcttcacctgag-aatttcggcgtcttaacagta 808  Q
    | ||  ||||||||||||||||||||||| |||||||| ||||| ||||||    
T  6367075 acggcagtgttgaatgtgcttcacctgagaaatttcggagtcttgacagta 6367125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 369 - 788
Target Start/End: Original strand, 6420485 - 6420904
Alignment:
Q  369 ttaatctcaaatggaaatttatactttta-tgcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgacccttaaagg 467  Q
    ||||||||| ||||||||||||| ||| | |||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||| ||    
T  6420485 ttaatctcagatggaaatttatattttaactgcaggcacttcctaaaacattttcagacaatttaaaaaagaagttgccagaaaatgtgacccttaaggg 6420584  T
Q  468 tcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcattctttgaaa 567  Q
    ||||||||||| ||| ||| |||| ||| ||||||||||| || ||||||| ||  |||||| ||||||| |||| || |||||||||||||||||||||    
T  6420585 tcctagtggagctgtgtgggatattgggttgacaactagagataatactgtttacttcgtgggcggttgggagcgattcgtgaaagatcattctttgaaa 6420684  T
Q  568 gaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagcttcttattttg 667  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||| |||||||| ||| ||||||||||||    
T  6420685 gagaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttgatggagataacttttgtgagaaggcaacttcttattttg 6420784  T
Q  668 ttctagaatgcggacaagctcatactgaacaagggggcaacaaaggaaagaattcaaacaannnnnnngaagaagttaatactccttcctaatggtggtg 767  Q
    |   | |||| ||||| ||||| |||||| ||||||| | ||| | ||||||  ||||||        |||||||| |||||| ||| |||||||||| |    
T  6420785 tcagaaaatgtggacatgctcaaactgaagaagggggtagcaaggtaaagaacacaaacacatctgttgaagaagtcaatactgctt-ctaatggtggcg 6420883  T
Q  768 ttgaatgtgcttcacctgaga 788  Q
    |||| |||| |||||||||||    
T  6420884 ttgactgtggttcacctgaga 6420904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 360 - 700
Target Start/End: Original strand, 6404029 - 6404370
Alignment:
Q  360 caatttatcttaatctcaaatggaaatttatacttttat-gcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgac 458  Q
    |||| ||||||||| ||||| ||||||||||  ||| || ||||||||||||||||||||| |||||||| |||||||| || ||||| |||||||||||    
T  6404029 caatgtatcttaatatcaaaaggaaatttatgttttaattgcaggcacttcctaaaacattttcagacaatttaaagaacaagttgcctgaaaatgtgac 6404128  T
Q  459 ccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcat 558  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||| || |||| || ||  ||  |||||||||||| || |||||||||||||||    
T  6404129 ccttaaaggtcctagtggagttgtttggaatataggactgacaactagagattatacggtttacttcacggacggttggcaacgatttgtgaaagatcat 6404228  T
Q  559 tctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagctt 658  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || | || | ||| |||||||| ||| |||    
T  6404229 tctttgaaagagaatgatttccttgtttttaagtacaatggtgaatcactctttgaggttttaatctttgatcgagataacttttgtgagaaggcaactt 6404328  T
Q  659 cttattttgttctagaatgcggacaagctcatactgaacaag 700  Q
    |||||||||||  | |||||||||| ||||| ||||||||||    
T  6404329 cttattttgttggaaaatgcggacatgctcaaactgaacaag 6404370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 373 - 704
Target Start/End: Original strand, 6379084 - 6379416
Alignment:
Q  373 tctcaaatggaaatttatacttttat-gcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgacccttaaaggtcct 471  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| || ||||||| ||||||||||||||||||||||    
T  6379084 tctcaaatggaaatttatacttttattgcaggcacttcctaaaacattttcagacaatttaaagaacaagttgccagcaaatgtgacccttaaaggtcct 6379183  T
Q  472 agtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcattctttgaaagaaa 571  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||  | ||   |  ||| |||||||| |  || ||||||||||| ||||||||| | |    
T  6379184 agtggagttgtgtgggatatagggctgacaactagagatgatacaatttactccacggatggttggcaacaattcgtgaaagatcactctttgaaacaga 6379283  T
Q  572 atgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagcttcttattttgttct 671  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||||||| || ||||||||||||||||||||| ||||    
T  6379284 atgatttccttgtcttcaagtacaatggtgaatcactgtttgaggttttaatctttcatggagaaagcttctgcgagaaagcagcttcttattttattct 6379383  T
Q  672 agaatgcggacaagctcatactgaacaaggggg 704  Q
     ||| | |||||||||||||||| |||| ||||    
T  6379384 tgaacgtggacaagctcatactggacaaagggg 6379416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 369 - 669
Target Start/End: Original strand, 6380297 - 6380598
Alignment:
Q  369 ttaatctcaaatggaaatttatacttttat-gcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgacccttaaagg 467  Q
    ||||||||| ||||||||||||| ||| || |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  6380297 ttaatctcagatggaaatttatattttaattgcaggcacttcctaaaacattctcagacaatttaaagaagaagttgccagaaaatgtgacccttaaagg 6380396  T
Q  468 tcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcattctttgaaa 567  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||| ||| ||  | |||||||||||| | || ||  | |||||||| |||||||||    
T  6380397 tcctagtggagttgtgtggaatatagggctgacaactagagatgatattgtttactttgtggacggttggaaacgattcattaaagatcactctttgaaa 6380496  T
Q  568 gaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagcttcttattttg 667  Q
     | |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||| || || || |||||||| ||||||||||||||||    
T  6380497 cagaatgatttccttgtctttaagtacaacggtaaatcactctttgaggttttaatctttgatggagatagtttctgtgagaaggcagcttcttattttg 6380596  T
Q  668 tt 669  Q
    ||    
T  6380597 tt 6380598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 398 - 703
Target Start/End: Original strand, 6399345 - 6399650
Alignment:
Q  398 tgcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggct 497  Q
    |||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||    
T  6399345 tgcaggcacttcctaaaacattttcagacaatttaaagaagaagttgccagaaaatgtgactcttaaaggtcctagtggagttgtgtggaatataggact 6399444  T
Q  498 gacaactagaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaat 597  Q
    |||||||||| || ||||||| ||  |||||||||||||||| |  || ||||| ||||| ||||||||||| |||||||||||||||||||||||||||    
T  6399445 gacaactagagataatactgtttacttcgtggacggttggcaacaattcgtgaacgatcactctttgaaagagaatgatttccttgtctttaagtacaat 6399544  T
Q  598 ggtgaatcactctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagcttcttattttgttctagaatgcggacaagctcatactgaac 697  Q
    |||||||||||||||||||||||||||||| ||||  | || || |||||||| ||| |||||||||||||   | |||||||||| ||||| |||||||    
T  6399545 ggtgaatcactctttgaggttttaatctttgatggaaatagtttttgtgagaaggcaacttcttattttgtcggaaaatgcggacatgctcaaactgaac 6399644  T
Q  698 aagggg 703  Q
    ||||||    
T  6399645 aagggg 6399650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 369 - 668
Target Start/End: Original strand, 6358785 - 6359085
Alignment:
Q  369 ttaatctcaaatggaaatttatacttttat-gcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgacccttaaagg 467  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  6358785 ttaatctcaaattgaaatttatacttttattgcaggcacttcctaaaacattttcagacaatttaaataagaagttgccagaaaatgtgacccttaaagg 6358884  T
Q  468 tcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcattctttgaaa 567  Q
    |||  |||| |||| |||||| |||||||| | ||||||| | |||||||| ||  || || |||||||||| || || ||||| ||||| |||||||||    
T  6358885 tcccggtggtgttgcatggaaaatagggctcataactagagacgatactgtttacttcctgaacggttggcaacgattcgtgaacgatcactctttgaaa 6358984  T
Q  568 gaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagcttcttattttg 667  Q
    || |||||||||||||||||||| ||||||||||| |||| |||||| ||||| |||||| |||| |||||||| |||||||||| ||||||||||||||    
T  6358985 gataatgatttccttgtctttaattacaatggtgagtcacactttgatgttttgatctttgatggagaaagcttctgtgagaaagaagcttcttattttg 6359084  T
Q  668 t 668  Q
    |    
T  6359085 t 6359085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 367 - 668
Target Start/End: Original strand, 6348741 - 6349043
Alignment:
Q  367 tcttaatctcaaatggaaatttatacttttat-gcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgacccttaaa 465  Q
    ||||| |||||  ||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||    
T  6348741 tcttattctcatttggaaatttatacttttattgcaggcacttcctaaaacattttcagacaatttaaataagaagttgccagaaaatgtgacccttaaa 6348840  T
Q  466 ggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcattctttga 565  Q
    |||||||||||||||  |||||||||| |||||||||||||| |||    ||| ||  |||||||||||||||| |  ||  |||| ||||| || ||||    
T  6348841 ggtcctagtggagttacatggaatataaggctgacaactagagatggctttgtttacttcgtggacggttggcaacaattcatgaacgatcactcgttga 6348940  T
Q  566 aagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagcttcttattt 665  Q
    |||  |||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||| |||| |||||||| |||||||||| ||||||||||||    
T  6348941 aagctaatgatttccttgtctgtaagtacaatggtgaatcacacttcgaggttttaatctttgatggagaaagcttctgtgagaaagaagcttcttattt 6349040  T
Q  666 tgt 668  Q
    |||    
T  6349041 tgt 6349043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 369 - 669
Target Start/End: Original strand, 6415328 - 6415629
Alignment:
Q  369 ttaatctcaaatggaaatttatacttttat-gcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgacccttaaagg 467  Q
    ||||||||| |||||||||| || ||| || ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  6415328 ttaatctcagatggaaatttgtattttaattgcaggcacttcctaaaacattttcagacaacttaaagaagaagttgccagaaaatgtgacccttaaagg 6415427  T
Q  468 tcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcattctttgaaa 567  Q
    ||||||||||||||| |||||||||||||||||||||| | |||| ||||| ||  ||    |||||||||| |  |||||||| ||||| |||||||||    
T  6415428 tcctagtggagttgtgtggaatatagggctgacaactatagatgacactgtttacttcacaaacggttggcaacaatttgtgaatgatcactctttgaaa 6415527  T
Q  568 gaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagcttcttattttg 667  Q
    || | |||||||||| |||| |||||||||||||||||  | ||||| |||||||||||| ||||    || || |||||||| ||||||||||||||||    
T  6415528 gagagtgatttccttttcttcaagtacaatggtgaatcgttgtttgaagttttaatctttgatggacgtagtttctgtgagaaggcagcttcttattttg 6415627  T
Q  668 tt 669  Q
    ||    
T  6415628 tt 6415629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 367 - 700
Target Start/End: Original strand, 6357409 - 6357743
Alignment:
Q  367 tcttaatctcaaatggaaatttatacttttat-gcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgacccttaaa 465  Q
    ||||| |||||| ||||||| ||||  ||||| |||||| ||||| |||||||| |||||||| ||||||||||| |||||||  || ||||||||||||    
T  6357409 tcttagtctcaactggaaatctataaatttattgcaggcccttccgaaaacattttcagacaatttaaagaagaagttgccaggcaacgtgacccttaaa 6357508  T
Q  466 ggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcattctttga 565  Q
    ||||||||||||||||| |||||| | ||||||||| ||||| |||||||  | ||  ||  | | || |||||  | || ||||||||||| |||||||    
T  6357509 ggtcctagtggagttgtgtggaatgttgggctgacagctagagatgataccatttacttcacgaatggatggcaaagattcgtgaaagatcactctttga 6357608  T
Q  566 aagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagcttcttattt 665  Q
    |||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| |||| || || || |||||||| ||||||||||||||    
T  6357609 aagagaatgatttccttgtctttaagtacaatggggagtcactctttgaagttttaatctttcatggagatagtttctgtgagaaggcagcttcttattt 6357708  T
Q  666 tgttctagaatgcggacaagctcatactgaacaag 700  Q
    ||||  | |||| ||||||||||||||||||||||    
T  6357709 tgttggaaaatgtggacaagctcatactgaacaag 6357743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 360 - 669
Target Start/End: Original strand, 6391044 - 6391354
Alignment:
Q  360 caatttatcttaatctcaaatggaaatttatacttttat-gcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgac 458  Q
    |||| |||| |||||||||||||||||||||  |||||| |||||||||||||| ||||||||||||||| || ||||||||  ||||||||||||||||    
T  6391044 caatgtatcataatctcaaatggaaatttatcattttattgcaggcacttcctagaacattctcagacaatttgaagaagaagctgccagaaaatgtgac 6391143  T
Q  459 ccttaaaggtcctagtggagttgtatggaatatagggctgacaactagaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcat 558  Q
    ||||||||||||||||||||||| ||||||| ||||||||  ||||||| || ||||||| ||  |||||||||||||||| | |||||  | |||||||    
T  6391144 ccttaaaggtcctagtggagttgaatggaatgtagggctgcaaactagagataatactgtttacttcgtggacggttggcatcagtttgcaagagatcat 6391243  T
Q  559 tctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagctt 658  Q
    ||| ||||||| |||||||||   ||||||||||||||||| |||||| | ||  | || ||||||||| | || |||||||| ||||||||||| ||||    
T  6391244 tctctgaaagagaatgatttcgcagtctttaagtacaatggcgaatcattgttcaatgtgttaatctttcaaggagaaagcttttgtgagaaagcggctt 6391343  T
Q  659 cttattttgtt 669  Q
    | |||||||||    
T  6391344 cctattttgtt 6391354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 377 - 691
Target Start/End: Original strand, 6347660 - 6347975
Alignment:
Q  377 aaatggaaatttatacttttat-gcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtg 475  Q
    ||||||| |||||||||||| | |||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||| ||||| ||||||| |    
T  6347660 aaatggacatttatacttttgttgcaggcacttccgaaaacattttcagacaatttaaagaagaagttaccagaaaatgtgaccattaaatgtcctagcg 6347759  T
Q  476 gagttgtatggaatatagggctgacaactagaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcattctttgaaagaaaatga 575  Q
    || |||| |||||||||||||||||| |||||  ||||||||| ||  ||  | || ||||||| |  || || ||||| || || ||||| ||||||||    
T  6347760 gaattgtgtggaatatagggctgacagctagaggtgatactgtttacttcacgaacagttggcaacaattcgtcaaagaccactccttgaaggaaaatga 6347859  T
Q  576 tttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagcttcttattttgttctagaa 675  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||  | || || |||||||| ||||| || |||||||||| | ||    
T  6347860 tttccttgtatttaagtacaatggtgaatcacactttgaggttttaatctttaatggaaatagtttctgtgagaaggcagcgtcatattttgttcaaaaa 6347959  T
Q  676 tgcggacaagctcata 691  Q
    || |||||||||||||    
T  6347960 tgtggacaagctcata 6347975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 398 - 710
Target Start/End: Original strand, 6427853 - 6428165
Alignment:
Q  398 tgcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggct 497  Q
    |||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  6427853 tgcaggcacttcctaaaacattttcagacaatttaaaaaagaagttgcctgaaaatgtgaaccttaaaggtcctagtggagttgtgtggaatatagggct 6427952  T
Q  498 gacaactagaaatgatactgtgtatctcgtggacggttggcagcggtttgtgaaagatcattctttgaaagaaaatgatttccttgtctttaagtacaat 597  Q
    |||||||| | | || ||||| ||  ||    ||||||||||  | |||||||| ||||| ||||||||||| | |||||||||| | || || ||||||    
T  6427953 gacaactaaagaggacactgtttacttcacaaacggttggcaaggatttgtgaatgatcactctttgaaagagagtgatttcctttttttcaaatacaat 6428052  T
Q  598 ggtgaatcactctttgaggttttaatctttaatggggaaagcttatgtgagaaagcagcttcttattttgttctagaatgcggacaagctcatactgaac 697  Q
    || |||||| | ||||| |||||||| ||| |||| || | |||||| |||||||| |  || ||||||||   | | || ||||||| ||||||||| |    
T  6428053 ggagaatcattgtttgaagttttaatatttcatggtgagaccttatgcgagaaagcgggctcctattttgtaagaaagtgtggacaaggtcatactgagc 6428152  T
Q  698 aagggggcaacaa 710  Q
    ||| |||||||||    
T  6428153 aagagggcaacaa 6428165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 6414276 - 6414368
Alignment:
Q  19 gggaggaagagatttactggatccattttcagttcatccatttcaccctatttct---gagcaccacccattttcaacaataacttgttagta 108  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    ||||||||| ||||||||||| ||| ||| ||||    
T  6414276 gggaggaagagatttactggaaccattttcagttcatccatttcaccctatttcttcatagcaccaccaattttcaacaacaacctgtaagta 6414368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 6426923 - 6427021
Alignment:
Q  13 gatcacgggaggaagagatttactggatccattttcagttcatccatttcaccctatttctgagcaccacccattttcaacaataacttgttagtattc 111  Q
    ||||| |||||||||| |||||||||| |||||||||||||||||||||||| | ||||||  ||| |||  ||||||||||| |||||||||||||||    
T  6426923 gatcatgggaggaagacatttactggacccattttcagttcatccatttcactcaatttcttcgcaacactgattttcaacaacaacttgttagtattc 6427021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 6403348 - 6403432
Alignment:
Q  19 gggaggaagagatttactggatccattttcagttcatccatttcaccctatttctgagcaccacccattttcaacaataacttgt 103  Q
    |||||||||| |||||||||| ||||||||| |||||||||||||| |||||||| ||||||    ||||||||||| |||||||    
T  6403348 gggaggaagatatttactggaaccattttcaattcatccatttcactctatttcttagcacctttgattttcaacaacaacttgt 6403432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 6346865 - 6346943
Alignment:
Q  30 atttactggatccattttcagttcatccatttcaccctatttctgagcaccacccattttcaacaataacttgttagta 108  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||| ||  ||||||| ||||    
T  6346865 atttattggacccattttcagttcatccatttcaccctttttctgagcatcaccgattttcaccatcaacttgtaagta 6346943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 6357832 - 6357884
Alignment:
Q  14 atcacgggaggaagagatttactggatccattttcagttcatccatttcaccc 66  Q
    |||| |||||||||| |||||||||| ||||||||||||||||||||||||||    
T  6357832 atcatgggaggaagacatttactggacccattttcagttcatccatttcaccc 6357884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 6356364 - 6356456
Alignment:
Q  19 gggaggaagagatttactggatccattttcagttcatccatttcaccctatttct---gagcaccacccattttcaacaataacttgttagta 108  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||| || ||||||    | ||||||| ||||||||||| ||||||| ||||    
T  6356364 gggagaaagagatttactggacccattttcagttcattcatttcatccaatttcttcaaaccaccaccgattttcaacaacaacttgtgagta 6356456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 6379501 - 6379560
Alignment:
Q  14 atcacgggaggaagagatttactggatccattttcagttcatccatttcaccctatttct 73  Q
    |||| |||||||||| |||||||||| |||||| || |||||||||||||||| ||||||    
T  6379501 atcatgggaggaagacatttactggacccatttccaattcatccatttcacccaatttct 6379560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 6366076 - 6366168
Alignment:
Q  14 atcacgggaggaagagatttactggatccattttcagttcatccatttcaccctatttct---gagcaccacccattttcaacaataacttgt 103  Q
    |||| |||||||||||||||| |||  ||||||||| ||||||||||| ||| | |||||    ||||||||| ||||||||||| |||||||    
T  6366076 atcatgggaggaagagatttattggtcccattttcaattcatccattttaccatttttcttcaaagcaccaccgattttcaacaacaacttgt 6366168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 6397201 - 6397255
Alignment:
Q  19 gggaggaagagatttactggatccattttcagttcatccatttcaccctatttct 73  Q
    |||| ||||| |||||||||| |||||| ||||||||||||||||||| ||||||    
T  6397201 gggaagaagatatttactggacccatttccagttcatccatttcacccaatttct 6397255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 6358279 - 6358327
Alignment:
Q  232 ttttacaattcctttaactgcacttattagttcttttgaacaaagttttcag 283  Q
    |||||||||||||||||||||||   |||||||||||||| |||||||||||    
T  6358279 ttttacaattcctttaactgcac---ttagttcttttgaagaaagttttcag 6358327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 6419691 - 6419745
Alignment:
Q  19 gggaggaagagatttactggatccattttcagttcatccatttcaccctatttct 73  Q
    |||| ||||| |||||||||| | ||||||||||||| |||||||||| ||||||    
T  6419691 gggaagaagatatttactggaacaattttcagttcattcatttcacccaatttct 6419745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 632
Target Start/End: Original strand, 6439622 - 6439696
Alignment:
Q  558 ttctttgaaagaaaatgatttccttgtctttaagtacaatggtgaatcactctttgaggttttaatctttaatgg 632  Q
    |||||||||||| || || |||||  ||||||||||||||||| ||||  | |||||||||||||| ||| ||||    
T  6439622 ttctttgaaagagaacgacttcctgttctttaagtacaatggtaaatcgttgtttgaggttttaatatttgatgg 6439696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 507
Target Start/End: Original strand, 6439461 - 6439570
Alignment:
Q  398 tgcaggcacttcctaaaacattctcagacaacttaaagaagaatttgccagaaaatgtgacccttaaaggtcctagtggagttgtatggaatatagggct 497  Q
    ||||||| ||||| |||||||| ||| ||||  | || |||||  |||| |||||||||  ||| ||||||||| |||||||   |||||||||||||||    
T  6439461 tgcaggctcttcccaaaacattttcaaacaatgtcaaaaagaagctgcctgaaaatgtggtcctaaaaggtcctggtggagtgacatggaatatagggct 6439560  T
Q  498 gacaactaga 507  Q
     |||| ||||    
T  6439561 aacaagtaga 6439570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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