View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5880-Insertion-2 (Length: 804)

Name: NF5880-Insertion-2
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5880-Insertion-2
NF5880-Insertion-2
[»] chr2 (8 HSPs)
chr2 (377-804)||(3266961-3267388)
chr2 (9-166)||(3266800-3266960)
chr2 (396-470)||(31092828-31092902)
chr2 (321-378)||(18900623-18900680)
chr2 (177-228)||(45627809-45627860)
chr2 (174-228)||(18900620-18900674)
chr2 (327-379)||(45627808-45627860)
chr2 (484-549)||(31092718-31092786)
[»] chr6 (12 HSPs)
chr6 (177-377)||(30780268-30780468)
chr6 (177-378)||(25054438-25054639)
chr6 (177-377)||(17193740-17193940)
chr6 (178-377)||(3962538-3962737)
chr6 (325-379)||(17193887-17193941)
chr6 (325-379)||(25054437-25054491)
chr6 (325-379)||(30780267-30780321)
chr6 (325-377)||(3962538-3962590)
chr6 (178-232)||(17193740-17193794)
chr6 (176-230)||(25054586-25054640)
chr6 (178-230)||(3962685-3962737)
chr6 (178-230)||(30780416-30780468)
[»] chr8 (7 HSPs)
chr8 (175-377)||(29739906-29740108)
chr8 (178-377)||(10756450-10756649)
chr8 (325-378)||(29739908-29739961)
chr8 (325-377)||(10756450-10756502)
chr8 (178-230)||(10756597-10756649)
chr8 (178-230)||(29740056-29740108)
chr8 (321-381)||(11128887-11128947)
[»] chr5 (13 HSPs)
chr5 (178-377)||(11772741-11772940)
chr5 (178-377)||(17534545-17534744)
chr5 (305-379)||(8881020-8881094)
chr5 (325-377)||(11772741-11772793)
chr5 (325-377)||(17534692-17534744)
chr5 (177-230)||(8881021-8881074)
chr5 (178-230)||(11772888-11772940)
chr5 (178-230)||(17534545-17534597)
chr5 (396-470)||(17333459-17333533)
chr5 (402-470)||(24124921-24124989)
chr5 (335-378)||(8881095-8881138)
chr5 (176-220)||(8881095-8881139)
chr5 (178-228)||(43514489-43514539)
[»] chr3 (10 HSPs)
chr3 (177-376)||(34630588-34630786)
chr3 (251-377)||(46905406-46905529)
chr3 (178-257)||(46906240-46906319)
chr3 (325-379)||(34630587-34630641)
chr3 (327-377)||(22899519-22899569)
chr3 (409-470)||(1780320-1780381)
chr3 (179-230)||(34630735-34630786)
chr3 (178-228)||(22899519-22899569)
chr3 (178-230)||(46905406-46905458)
chr3 (325-377)||(46906267-46906319)
[»] chr4 (5 HSPs)
chr4 (178-374)||(51268324-51268521)
chr4 (396-470)||(52724907-52724981)
chr4 (325-377)||(51268324-51268376)
chr4 (181-230)||(51268472-51268521)
chr4 (178-228)||(44891723-44891773)
[»] chr7 (9 HSPs)
chr7 (251-339)||(43405484-43405572)
chr7 (396-470)||(27274949-27275023)
chr7 (178-256)||(43406290-43406368)
chr7 (409-470)||(32515285-32515346)
chr7 (409-470)||(33438151-33438212)
chr7 (615-677)||(16901804-16901866)
chr7 (325-377)||(43406316-43406368)
chr7 (616-663)||(32406295-32406342)
chr7 (36-93)||(12641366-12641423)
[»] chr1 (5 HSPs)
chr1 (396-470)||(10448786-10448860)
chr1 (321-376)||(45970002-45970057)
chr1 (178-228)||(26853111-26853161)
chr1 (176-230)||(38459408-38459461)
chr1 (179-228)||(45970002-45970051)


Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 377 - 804
Target Start/End: Original strand, 3266961 - 3267388
Alignment:
Q  377 cttccgggatattagttaacaaaaattacaactttcccttatcagttttatgattggtgccaaaaccctatgttatgcttgggtggtgcttaatctctgt 476  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3266961 cttccggaacattagttaacaaaaattacaactttcccttatcagttttatgattggtgccaaaaccctatgttatgcttgggtggtgcttaatctctgt 3267060  T
Q  477 tattttttctatctactttagtacaccttatactggagggatagtttgtagttaatataatccattttgatttcttnnnnnnnnnnnnctaattaacaaa 576  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||            ||||||||||||    
T  3267061 tattttttctatctactttggtacaccttatactggagggatagtttgtagttaatataatccattttgattttttaaaaaaaaaaaactaattaacaaa 3267160  T
Q  577 aacttcgttaacattttccttaaaaccagaaacatctgcttgacaactgcaatcacaaatttacacaattcaaagttgaagtgctgagaagtttaaagtt 676  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3267161 aacttcgttaacattttccttaaaaccagaaacatctgcttgacaagtgcaatcacaaatttacacaattcaaagttgaagtgctgagaagtttaaagtt 3267260  T
Q  677 tctacgaattagtaaaaatgattttgcaaagagcaacaaaatagaagatgcactaaaatatgacaagggccataataaagttatatgaaaattatgttga 776  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3267261 tctacgaattagtaaaaatcattttgcaaagagcaacaaaatagaagatgcactaaaatatgacaagggccataataaagttatatgaaaattatgttga 3267360  T
Q  777 gaagggttccatctaaccaatccagaat 804  Q
    |||| |||||||||||||||||||||||    
T  3267361 gaagagttccatctaaccaatccagaat 3267388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 3266800 - 3266960
Alignment:
Q  9 tctagaactagaatcaatgttgtaaagcatgtcggaatttgaaactgacttgggttatgtctgcgagtcttcaatgtatattcatccattgttagctaca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3266800 tctagaactagaatcaatgttgtaaagcatgtcggaatttgaaactgacttgggttatgtctgcgagtcttcaatgtatattcatccattgttagctaca 3266899  T
Q  109 tactcatttagtatactcttttttaacattgacgt---atccttgaaaatgttaactagtg 166  Q
    |||||||||||||||||||||||||||||||||||   ||||||| |||||||||| ||||    
T  3266900 tactcatttagtatactcttttttaacattgacgtagcatccttggaaatgttaaccagtg 3266960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 396 - 470
Target Start/End: Complemental strand, 31092902 - 31092828
Alignment:
Q  396 caaaaattacaactttcccttatcagttttatgattggtgccaaaaccctatgttatgcttgggtggtgcttaat 470  Q
    |||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  31092902 caaaaattgcagctttcccttatcagtttcatgattggtgccaaaaccctttgttatgcttgggtggtgcttaat 31092828  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 321 - 378
Target Start/End: Complemental strand, 18900680 - 18900623
Alignment:
Q  321 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctct 378  Q
    ||||| ||||||| ||||| ||||||||||||||||||| |||| |||||||||||||    
T  18900680 catgtcattggagagtgttaaaagagtgtgtttgagagtgtgtccttagcatttctct 18900623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 45627809 - 45627860
Alignment:
Q  177 agagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaat 228  Q
    |||||||||||| |||||||||||| |||||| ||||| |||||||||||||    
T  45627809 agagaaatgctagggacaaactccctaacacactcttttaacacactccaat 45627860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 18900620 - 18900674
Alignment:
Q  174 gatagagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaat 228  Q
    ||||||||||||||||||||| |||| |||||||| ||||| ||||| |||||||    
T  18900620 gatagagaaatgctaaggacacactctcaaacacactcttttaacactctccaat 18900674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 45627860 - 45627808
Alignment:
Q  327 attggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctctt 379  Q
    ||||||||||||| |||||||||||| | |||||||||  |||||||||||||    
T  45627860 attggagtgtgttaaaagagtgtgttagggagtttgtccctagcatttctctt 45627808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 484 - 549
Target Start/End: Complemental strand, 31092786 - 31092718
Alignment:
Q  484 tctatctactttagtacaccttatactggagggatagtttgt---agttaatataatccattttgattt 549  Q
    |||||| ||||||||||||||| | |||||||||||  ||||    |||||||||||||||||||||||    
T  31092786 tctatccactttagtacaccttgtgctggagggataacttgttgatgttaatataatccattttgattt 31092718  T

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Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 177 - 377
Target Start/End: Original strand, 30780268 - 30780468
Alignment:
Q  177 agagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatat 276  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30780268 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatat 30780367  T
Q  277 taggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttct 376  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30780368 taggttgtcggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 30780467  T
Q  377 c 377  Q
    |    
T  30780468 c 30780468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 177 - 378
Target Start/End: Original strand, 25054438 - 25054639
Alignment:
Q  177 agagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatat 276  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25054438 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatat 25054537  T
Q  277 taggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttct 376  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25054538 taggttgtcagttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 25054637  T
Q  377 ct 378  Q
    ||    
T  25054638 ct 25054639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 177 - 377
Target Start/End: Complemental strand, 17193940 - 17193740
Alignment:
Q  177 agagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatat 276  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17193940 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatat 17193841  T
Q  277 taggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttct 376  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17193840 taggttgtcggttaattaaacaaaggatggggatgatgtgtcaacatattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 17193741  T
Q  377 c 377  Q
    |    
T  17193740 c 17193740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 178 - 377
Target Start/End: Original strand, 3962538 - 3962737
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatatt 277  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3962538 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatatt 3962637  T
Q  278 aggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctc 377  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3962638 aggttgtcggttaattaaacaaaggatggagatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 3962737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 325 - 379
Target Start/End: Original strand, 17193887 - 17193941
Alignment:
Q  325 ttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctctt 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17193887 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctt 17193941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 25054491 - 25054437
Alignment:
Q  325 ttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctctt 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25054491 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctt 25054437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 30780321 - 30780267
Alignment:
Q  325 ttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctctt 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30780321 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctt 30780267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 3962590 - 3962538
Alignment:
Q  325 ttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctc 377  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3962590 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 3962538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 17193740 - 17193794
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataata 232  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  17193740 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataata 17193794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 25054640 - 25054586
Alignment:
Q  176 tagagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataa 230  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  25054640 tagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 25054586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 3962737 - 3962685
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataa 230  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  3962737 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 3962685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 30780468 - 30780416
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataa 230  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  30780468 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 30780416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 1e-98; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 175 - 377
Target Start/End: Original strand, 29739906 - 29740108
Alignment:
Q  175 atagagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 274  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29739906 atagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcat 29740005  T
Q  275 attaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcattt 374  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29740006 attaggttgtcagttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 29740105  T
Q  375 ctc 377  Q
    |||    
T  29740106 ctc 29740108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 178 - 377
Target Start/End: Original strand, 10756450 - 10756649
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatatt 277  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10756450 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatatt 10756549  T
Q  278 aggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctc 377  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10756550 aggttgtcagttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 10756649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 29739961 - 29739908
Alignment:
Q  325 ttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctct 378  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29739961 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 29739908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 10756502 - 10756450
Alignment:
Q  325 ttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctc 377  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10756502 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 10756450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 10756649 - 10756597
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataa 230  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  10756649 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 10756597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 29740108 - 29740056
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataa 230  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  29740108 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 29740056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 11128887 - 11128947
Alignment:
Q  321 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctcttcc 381  Q
    ||||| ||||||| ||||| ||||||||||||||||||| |||| ||||||||| ||||||    
T  11128887 catgtcattggagggtgttaaaagagtgtgtttgagagtgtgtccttagcatttttcttcc 11128947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 180; Significance: 9e-97; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 178 - 377
Target Start/End: Original strand, 11772741 - 11772940
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatatt 277  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772741 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatatt 11772840  T
Q  278 aggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctc 377  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11772841 aggttgttggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 11772940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 178 - 377
Target Start/End: Complemental strand, 17534744 - 17534545
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatatt 277  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17534744 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatatt 17534645  T
Q  278 aggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctc 377  Q
    ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17534644 aggttgttggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17534545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 305 - 379
Target Start/End: Complemental strand, 8881094 - 8881020
Alignment:
Q  305 ggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctctt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8881094 ggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctt 8881020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 11772793 - 11772741
Alignment:
Q  325 ttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctc 377  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11772793 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 11772741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 17534692 - 17534744
Alignment:
Q  325 ttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctc 377  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17534692 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17534744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 8881021 - 8881074
Alignment:
Q  177 agagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataa 230  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  8881021 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 8881074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 11772940 - 11772888
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataa 230  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  11772940 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 11772888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 17534545 - 17534597
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataa 230  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  17534545 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 17534597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 396 - 470
Target Start/End: Complemental strand, 17333533 - 17333459
Alignment:
Q  396 caaaaattacaactttcccttatcagttttatgattggtgccaaaaccctatgttatgcttgggtggtgcttaat 470  Q
    ||||| ||||| ||||||||||||||||| |||||||||| ||||||||| || | || ||||||||||||||||    
T  17333533 caaaatttacagctttcccttatcagtttcatgattggtgtcaaaaccctttgctttgtttgggtggtgcttaat 17333459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 402 - 470
Target Start/End: Original strand, 24124921 - 24124989
Alignment:
Q  402 ttacaactttcccttatcagttttatgattggtgccaaaaccctatgttatgcttgggtggtgcttaat 470  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| || | |||||||||| ||| ||||    
T  24124921 ttacagctttcccttatcagtttcatgattggtgccaaaaccctttgctttgcttgggtgatgcataat 24124989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 335 - 378
Target Start/End: Original strand, 8881095 - 8881138
Alignment:
Q  335 gtgttgaaagagtgtgtttgagagtttgtctttagcatttctct 378  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  8881095 gtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 8881138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 8881139 - 8881095
Alignment:
Q  176 tagagaaatgctaaggacaaactcccaaacacaatctttcaacac 220  Q
    |||||||||||||||||||||||| |||||||| |||||||||||    
T  8881139 tagagaaatgctaaggacaaactctcaaacacactctttcaacac 8881095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 43514539 - 43514489
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaat 228  Q
    ||||||||||| ||||| |||||| |||||| ||||| |||||||||||||    
T  43514539 gagaaatgctagggacacactccctaacacactcttttaacacactccaat 43514489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 2e-94; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 177 - 376
Target Start/End: Original strand, 34630588 - 34630786
Alignment:
Q  177 agagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataataggaagccacctcaccccaatttttaatacatttcaatttcatat 276  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34630588 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccc-aatttttaatacatttcaatttcatat 34630686  T
Q  277 taggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttct 376  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34630687 taggttgtcggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 34630786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 251 - 377
Target Start/End: Complemental strand, 46905529 - 46905406
Alignment:
Q  251 atttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtg 350  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||| |||||    
T  46905529 atttttaatacatttcaatttcatatcaggttgccggttaattaaacaaaggatggg---gatgtatcaacatgttattggagtgtgttgaaagtgtgtg 46905433  T
Q  351 tttgagagtttgtctttagcatttctc 377  Q
    ||||||||||| || ||||||||||||    
T  46905432 tttgagagtttatccttagcatttctc 46905406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 178 - 257
Target Start/End: Complemental strand, 46906319 - 46906240
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataataggaagccacctcaccccaattttta 257  Q
    |||||||||||||||||||| | |||||||| |||||  |||||||||||||||||||||||||||||||| | ||||||    
T  46906319 gagaaatgctaaggacaaaccctcaaacacactctttttacacactccaataataggaagccacctcacccaatttttta 46906240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 34630641 - 34630587
Alignment:
Q  325 ttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctctt 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34630641 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctt 34630587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 22899519 - 22899569
Alignment:
Q  327 attggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctc 377  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22899519 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 22899569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 409 - 470
Target Start/End: Original strand, 1780320 - 1780381
Alignment:
Q  409 tttcccttatcagttttatgattggtgccaaaaccctatgttatgcttgggtggtgcttaat 470  Q
    ||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||||||    
T  1780320 tttcccttatcagattcatgattggtgccaaaaccctttgttatgcttgggtggtacttaat 1780381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 34630786 - 34630735
Alignment:
Q  179 agaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataa 230  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  34630786 agaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 34630735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 22899569 - 22899519
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaat 228  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  22899569 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaat 22899519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 46905406 - 46905458
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataa 230  Q
    ||||||||||||||| |||||| ||||||||  ||||||||||||||||||||    
T  46905406 gagaaatgctaaggataaactctcaaacacacactttcaacacactccaataa 46905458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 46906267 - 46906319
Alignment:
Q  325 ttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctc 377  Q
    ||||||||||||||  |||||||||||||||| ||||||| ||||||||||||    
T  46906267 ttattggagtgtgtaaaaagagtgtgtttgagggtttgtccttagcatttctc 46906319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 174; Significance: 3e-93; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 178 - 374
Target Start/End: Original strand, 51268324 - 51268521
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataataggaagccacctcaccccaa-tttttaatacatttcaatttcatat 276  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  51268324 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataataggaagccacctcaccccaaatttttaatacatttcaatttcatat 51268423  T
Q  277 taggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcattt 374  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51268424 taggttgtcggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 51268521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 396 - 470
Target Start/End: Original strand, 52724907 - 52724981
Alignment:
Q  396 caaaaattacaactttcccttatcagttttatgattggtgccaaaaccctatgttatgcttgggtggtgcttaat 470  Q
    ||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  52724907 caaaatttacatctttctcttatcagtttcatgattggtgccaaaaccctatgttatgcttgggtggtgcttaat 52724981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 51268376 - 51268324
Alignment:
Q  325 ttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctc 377  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51268376 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 51268324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 51268521 - 51268472
Alignment:
Q  181 aaatgctaaggacaaactcccaaacacaatctttcaacacactccaataa 230  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  51268521 aaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 51268472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 44891723 - 44891773
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaat 228  Q
    ||||||||||| ||||| |||||| |||||| ||||| |||||||||||||    
T  44891723 gagaaatgctagggacacactccctaacacactcttttaacacactccaat 44891773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 251 - 339
Target Start/End: Complemental strand, 43405572 - 43405484
Alignment:
Q  251 atttttaatacatttcaatttcatattaggttgccggttaattaaacaaaggatggggatgatgtgtcaacatgttattggagtgtgtt 339  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43405572 atttttaatacatttcaatttcatatcaggttgccggttaattaaacaaaggatggggatgacgtgtcaacatgttattggagtgtgtt 43405484  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 396 - 470
Target Start/End: Complemental strand, 27275023 - 27274949
Alignment:
Q  396 caaaaattacaactttcccttatcagttttatgattggtgccaaaaccctatgttatgcttgggtggtgcttaat 470  Q
    ||||| |||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||    
T  27275023 caaaatttacaattttcccttatcagtttcatgattggtgcctaaaccctatgtcatgcttgggtggtgcttaat 27274949  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 43406368 - 43406290
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataataggaagccacctcaccccaattttt 256  Q
    ||||||||||||||| |||| | |||||||| |||||  ||||||||||||||||||||||||||||||| ||||||||    
T  43406368 gagaaatgctaaggataaaccctcaaacacactcttttgacacactccaataataggaagccacctcacctcaattttt 43406290  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 32515346 - 32515285
Alignment:
Q  409 tttcccttatcagttttatgattggtgccaaaaccctatgttatgcttgggtggtgcttaat 470  Q
    |||||||||||||||| ||||||||||||||||||||  ||| |||||||||||| ||||||    
T  32515346 tttcccttatcagtttcatgattggtgccaaaacccttggttgtgcttgggtggtacttaat 32515285  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 409 - 470
Target Start/End: Complemental strand, 33438212 - 33438151
Alignment:
Q  409 tttcccttatcagttttatgattggtgccaaaaccctatgttatgcttgggtggtgcttaat 470  Q
    |||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||    
T  33438212 tttctcttatcagtttcatgattggtgccaaaaccctttattatgcttgggtggtacttaat 33438151  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 615 - 677
Target Start/End: Complemental strand, 16901866 - 16901804
Alignment:
Q  615 cttgacaactgcaatcacaaatttacacaattcaaagttgaagtgctgagaagtttaaagttt 677  Q
    |||||||| ||||||||||||||||| ||| ||||||||| |||| |||||||||| ||||||    
T  16901866 cttgacaaatgcaatcacaaatttactcaactcaaagttgcagtgatgagaagttttaagttt 16901804  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 43406316 - 43406368
Alignment:
Q  325 ttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttctc 377  Q
    ||||||||||||||  |||||||||||||||| |||| || ||||||||||||    
T  43406316 ttattggagtgtgtcaaaagagtgtgtttgagggtttatccttagcatttctc 43406368  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 663
Target Start/End: Original strand, 32406295 - 32406342
Alignment:
Q  616 ttgacaactgcaatcacaaatttacacaattcaaagttgaagtgctga 663  Q
    ||||||| ||||||||||||||||| ||| ||||||||| ||||||||    
T  32406295 ttgacaattgcaatcacaaatttactcaactcaaagttgtagtgctga 32406342  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 12641423 - 12641366
Alignment:
Q  36 catgtcggaatttgaaactgacttgggttatgtctgcgagtcttcaatgtatattcat 93  Q
    ||||||||||||||||| | |||||| || | ||||||||| |||||| |||||||||    
T  12641423 catgtcggaatttgaaatttacttggattctttctgcgagtgttcaatatatattcat 12641366  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 396 - 470
Target Start/End: Original strand, 10448786 - 10448860
Alignment:
Q  396 caaaaattacaactttcccttatcagttttatgattggtgccaaaaccctatgttatgcttgggtggtgcttaat 470  Q
    ||||| ||||| | ||||||||| ||||| |||||||||||||||| ||| |||| |||||||||||||| ||||    
T  10448786 caaaatttacagcattcccttataagtttcatgattggtgccaaaatcctttgttgtgcttgggtggtgcataat 10448860  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 321 - 376
Target Start/End: Complemental strand, 45970057 - 45970002
Alignment:
Q  321 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtctttagcatttct 376  Q
    ||||| ||||||| ||||| ||||||||||||||||||| |||| |||||||||||    
T  45970057 catgtcattggagagtgttaaaagagtgtgtttgagagtgtgtccttagcatttct 45970002  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 26853161 - 26853111
Alignment:
Q  178 gagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaat 228  Q
    ||||||||||| ||||| |||||| |||||| ||||| |||||||||||||    
T  26853161 gagaaatgctagggacacactccctaacacactcttttaacacactccaat 26853111  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 38459408 - 38459461
Alignment:
Q  176 tagagaaatgctaaggacaaactcccaaacacaatctttcaacacactccaataa 230  Q
    ||||||||||||| ||||| |||||| |||||| ||||| |||||||||||||||    
T  38459408 tagagaaatgctagggacacactccctaacacactcttt-aacacactccaataa 38459461  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 45970002 - 45970051
Alignment:
Q  179 agaaatgctaaggacaaactcccaaacacaatctttcaacacactccaat 228  Q
    |||||||||||||||| |||| |||||||| ||||| ||||| |||||||    
T  45970002 agaaatgctaaggacacactctcaaacacactcttttaacactctccaat 45970051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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