View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5880-Insertion-3 (Length: 645)
Name: NF5880-Insertion-3
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 428377 - 428173
Alignment:
| Q |
8 |
atgaaactatgctatttttggctactaggtgttatgactaattgacactaattgagattgaaaacaaaaaattctttagcaacgttcctcttaattttct |
107 |
Q |
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| T |
428377 |
atgaaactatgctatttttggctactaggtgttatgactaattgacactaattgagattgaaaacaaacaattctttagcaacgttcctcttaattttct |
428278 |
T |
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| Q |
108 |
tctattgcttcaacccctttcgttggccggtgtccctttgagcttgtattgtgtgatgccatggaggttcttgttctgggtgatggtggggttgtgtacg |
207 |
Q |
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| T |
428277 |
tctattgcttcaacccctttcgttggtcggtgtccctttgagcttgtattgtgtgatgccatggaggttcttgttctgggtgatggtggggttgtgtaca |
428178 |
T |
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| Q |
208 |
ccgat |
212 |
Q |
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||||| |
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| T |
428177 |
ccgat |
428173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 536 - 645
Target Start/End: Complemental strand, 428167 - 428058
Alignment:
| Q |
536 |
tacttgctcaggccactcagaagaaatttcggacatcaactcaatgattttactgctgatgacattcaatattttaccaatgacttgtgtcatacgtaag |
635 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
428167 |
tacttgctcaggccactcagaagaaatttcggacatcaactcaatgattttactgctgatgacattcaatattttaccaatgacttgtgtcatacgtaag |
428068 |
T |
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| Q |
636 |
tatttgatcc |
645 |
Q |
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|||||||||| |
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| T |
428067 |
tatttgatcc |
428058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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