View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5880-Insertion-4 (Length: 639)
Name: NF5880-Insertion-4
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 9e-84; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 44915323 - 44915134
Alignment:
| Q |
7 |
catgttatgccattctttgttgaagccgtacttgttgtgggtctaaattgccctttatccctgcaccgtctattctttccgtatcaaattgttgtgcctt |
106 |
Q |
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| T |
44915323 |
catgttgtgccattctttgttgaagccgtacttgttgtgggtctaaattgcactttatccctgcaccatctattctttctgtatcaaattgttgtgcctt |
44915224 |
T |
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| Q |
107 |
ggcgactaacctcataccttgctgactagaagcaaattgagtgccccctgactgttgatttaaccccccttc-aaaacctgctggggaaa |
195 |
Q |
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| T |
44915223 |
ggcgactaacctcatgccttgctgactagaagcaaattgagtgccccctgactgttgatttaaccccccttcaaaaacctgctgtggaaa |
44915134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 469 - 632
Target Start/End: Complemental strand, 7749158 - 7748993
Alignment:
| Q |
469 |
ctgaagatgatcctccttttttgcttctttcatgatttgctggcccagacaatttgaggttgtctg--ggaaattaggtctcatcaatgcatgctgtagc |
566 |
Q |
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| T |
7749158 |
ctgaagctgatcctcctttttggcttctttctcgatttgctggcccagactattccaggttgtctgtgggaaattagatctcatgaatgcatgttgtggc |
7749059 |
T |
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| Q |
567 |
attctttgttgaatccgcaattgttgtgggtctaaatttcttgcatacatttccacctcactttta |
632 |
Q |
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| T |
7749058 |
attctttgctgaagccgtaattgttgtgggtctaaattgcttgcatccatttccaactcactttta |
7748993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 60 - 204
Target Start/End: Complemental strand, 7748986 - 7748841
Alignment:
| Q |
60 |
tttatccctgcaccgtctattctttccgtatcaaattgttgtgccttggcgactaacctcataccttgctgactagaagcaaattgagtgccccctgact |
159 |
Q |
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| T |
7748986 |
tttatccctgcaccatctattctttccatttcaaattgttcttccttggcaactaacctcatgccttgctgaccagaagcaaattgaatagcccctgtat |
7748887 |
T |
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| Q |
160 |
gttgatttaaccccccttcaaaa-cctgctggggaaatttctgaac |
204 |
Q |
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| T |
7748886 |
cttgatttaaccccccttcaaaaccctgctggggaaacttctgaac |
7748841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 202 - 287
Target Start/End: Complemental strand, 7749446 - 7749361
Alignment:
| Q |
202 |
aactacactcatcgctggggtcttgggaacggacttagatctccgttttgcagctaggcgttcctgttgttgcctttgtgtagaat |
287 |
Q |
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| T |
7749446 |
aactccactcattgcaggtgtcttgggaagggaattagatctccgttttgcagctaggtgtgcctgttgttgcctttgtgtagaat |
7749361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 533 - 604
Target Start/End: Complemental strand, 44915346 - 44915275
Alignment:
| Q |
533 |
tgggaaattaggtctcatcaatgcatgctgtagcattctttgttgaatccgcaattgttgtgggtctaaatt |
604 |
Q |
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| T |
44915346 |
tgggaaattaggtctcatggatgcatgttgtgccattctttgttgaagccgtacttgttgtgggtctaaatt |
44915275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 7749069 - 7749019
Alignment:
| Q |
7 |
catgttatgccattctttgttgaagccgtacttgttgtgggtctaaattgc |
57 |
Q |
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| T |
7749069 |
catgttgtggcattctttgctgaagccgtaattgttgtgggtctaaattgc |
7749019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 44915663 - 44915584
Alignment:
| Q |
202 |
aactacactcatcgctggggtcttgggaacggacttagatc-tccgttttgcagctaggcgttcctgttgttgcctttgt |
280 |
Q |
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| T |
44915663 |
aactccactcattgttggggtcttgggaagggaattagattatccattttgcagctaggtgtgtctgttgttgcctttgt |
44915584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 417
Target Start/End: Complemental strand, 7749355 - 7749246
Alignment:
| Q |
308 |
gatggagttccaacagctgcggcatgagaagccattggtgccttctccttttgtaatgctccaggtgtaattttcattgaagaccgtctaaaatttggtc |
407 |
Q |
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| T |
7749355 |
gatggagttccaacagcagcagtaagtgaagccattgctgccttctctttctgcaatgctccgggtgcggtgttcattgaagatggtccaaaactgggtc |
7749256 |
T |
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| Q |
408 |
cagctgaacc |
417 |
Q |
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| T |
7749255 |
caactgaacc |
7749246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 202 - 424
Target Start/End: Complemental strand, 2339331 - 2339109
Alignment:
| Q |
202 |
aactacactcatcgctggggtcttgggaacggacttagatctccgttttgcagctaggcgttcctgttgttgcctttgtgtagaattattagcattggaa |
301 |
Q |
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| T |
2339331 |
aactccactcattgatggggtcttgggaaaggaattagatccccgttttgcagctaggtgtgcctgttgttgcctttgagtagaatcattagcaatataa |
2339232 |
T |
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| Q |
302 |
gtcaaagatggagttccaacagctgcggcatgagaagccattggtgccttctccttttgtaatgctccaggtgtaattttcattgaagaccgtctaaaat |
401 |
Q |
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| T |
2339231 |
gtcaaagatggagttccaacagcagcagtacgtgaagccattgctgccttctctttttgtaatgctcctgatgcattgttcactgaagatggtccaaaac |
2339132 |
T |
|
| Q |
402 |
ttggtccagctgaaccatcagaa |
424 |
Q |
| |
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| T |
2339131 |
ttggtccaactgaaccattagaa |
2339109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 60 - 203
Target Start/End: Complemental strand, 2338904 - 2338760
Alignment:
| Q |
60 |
tttatccctgcaccgtctattctttccgtatcaaattgttgtgccttggcgactaacctcataccttgctgactagaagcaaattgagtgccccctgact |
159 |
Q |
| |
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||||||| |||||| ||| |||||||| | |||||||| | | |||| | ||||||||||| |||||||||| ||||| ||||||| | |||||| || |
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| T |
2338904 |
tttatccttgcaccatcttttctttccatttcaaattggtctaccttatcaactaacctcatgccttgctgaccagaagaaaattgaatagcccctgtct |
2338805 |
T |
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| Q |
160 |
gttgatttaaccccccttc-aaaacctgctggggaaatttctgaa |
203 |
Q |
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| T |
2338804 |
cttgatttaaacccccatcaaaaacctgctggggaaacttctgaa |
2338760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 599 - 639
Target Start/End: Complemental strand, 2338944 - 2338904
Alignment:
| Q |
599 |
taaatttcttgcatacatttccacctcacttttaatgcggt |
639 |
Q |
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| T |
2338944 |
taaatttcttgcatacatttcgaactcacttttaatgcggt |
2338904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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