View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5880-Insertion-5 (Length: 537)
Name: NF5880-Insertion-5
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 276
Target Start/End: Original strand, 6936503 - 6936771
Alignment:
| Q |
8 |
acttcttttacaagtcaccaatagctacacatcaaagggtcaacattaccttcaattcttcactcttcacaccaaatgatcaacacaaaagttacttgca |
107 |
Q |
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| T |
6936503 |
acttcttttacaagtcaccaatagctacacatcaaagggtcaacattaccttcaattcttcactcttcacaccaaatgatcaacacaaaag-tacttgca |
6936601 |
T |
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| Q |
108 |
aaactttataaacaattatagcagtaacataatcaatcgtatatttattcagttggtacttagttctcttaa-ttttannnnnnnngagggatacttata |
206 |
Q |
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| T |
6936602 |
aaactttataaacaattatagcagtaacataatcaatcgtatatttattcagttggtacttagttctcttaatttttattttttttgagggatacttata |
6936701 |
T |
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| Q |
207 |
gttctcttaatgtagtactaactatgtccctcatgttagtaattgagctttatctccaataaattaatca |
276 |
Q |
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| T |
6936702 |
gttttcttaatgtagtgctaactatgtccctcatgttagtaattgagctttatctccaataaattaatca |
6936771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 372 - 537
Target Start/End: Original strand, 6936868 - 6937036
Alignment:
| Q |
372 |
caaacactataaatccaatagggcaacatattctttactataagctagtttatccgtcatcagctagcttatcaaacatc---tannnnnnnnaccatac |
468 |
Q |
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| T |
6936868 |
caaacattataaatccaatagggcaacatattctttactataagctagtttatccgtcatcagttaacttatcaaacatctttttttttttttaccatac |
6936967 |
T |
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| Q |
469 |
atgacttaagtaaattaattgattgtgtnnnnnnntaaatttatattaattattagcaaaaatggcgtg |
537 |
Q |
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| T |
6936968 |
atcacttaagtaaattaattgattgtgtaaaaaaataaatttatattaattattagcaaaaatggcgtg |
6937036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 48 - 177
Target Start/End: Original strand, 6930039 - 6930169
Alignment:
| Q |
48 |
caacatta-ccttcaattcttcactcttcacaccaaatgatcaacacaaaagttacttgcaaaactttataaacaattatagcagtaacataatcaatcg |
146 |
Q |
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|||||||| ||||||||| || |||||||| |||||| | |||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| | |
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| T |
6930039 |
caacattagccttcaatttttaactcttcagaccaaagggtcaacataaaagttacttgcataactttataaacaattctagcagtaacataatcaatag |
6930138 |
T |
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| Q |
147 |
tatatttattcagttggtacttagttctctt |
177 |
Q |
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| T |
6930139 |
tatctttattcggttggtactttgttctctt |
6930169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 43029216 - 43029263
Alignment:
| Q |
56 |
ccttcaattcttcactcttcacaccaaatgatcaacacaaaagttact |
103 |
Q |
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| T |
43029216 |
ccttcaattcttcactcttcacaccaaagggtcaacataaaagttact |
43029263 |
T |
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