View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5880-Insertion-7 (Length: 262)
Name: NF5880-Insertion-7
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880-Insertion-7 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 262
Target Start/End: Complemental strand, 19232679 - 19232428
Alignment:
| Q |
11 |
aacaccatccttgttccgccgtccaccgccacattcctcacactcctccactcacacaaacttccattcataacctcacatacaacaagctcctctaata |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19232679 |
aacaccatccttgttccgccgtccaccgccacattcctcacactcctccactcacacaaacttccattcataacctcacatacaacaagctcctctagta |
19232580 |
T |
|
| Q |
111 |
ctaacgtgttccgcaagtaaacaaaatcaccaacccaaatcacttcaactgaaccaaactctgaatcacccttcaacttctccaccatttccttcggcat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
19232579 |
ctaacgtgttccgcaagtaaacaaaatccccaacccaaatcacttcaactgaaccaaactctgaatcacccttcagcttctccaccatctccttcggcat |
19232480 |
T |
|
| Q |
211 |
cgaaccgatttctttcattcccgaacttaatacatccttaacctcccacagc |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19232479 |
cgaaccgatttctttcattcccgaacttaatccatccttaacctcccacagc |
19232428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 14629317 - 14629541
Alignment:
| Q |
11 |
aacaccatccttgttccgccgtccaccgccacattcctcacactcctccactcacacaaacttccattcataacctcacatacaacaagctcctctaata |
110 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||| ||||||| |||||||||||||| | ||||| | |||||||||||||||||| || || || | |
|
|
| T |
14629317 |
aacaccatcctcgttccaccgtccaccgccgcattcttcacacttctccactcacacaagttcccatttacaacctcacatacaacaagttcatccaaca |
14629416 |
T |
|
| Q |
111 |
ctaacgtgttccgcaagtaaacaaaatcaccaacccaaatcacttcaactgaaccaaactctgaatcacccttcaacttctccaccatttccttcggcat |
210 |
Q |
| |
|
| |||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
14629417 |
ccaacgtgttacgcaagtaaaccaaattcccaacccaaattgcttcaactgaaccaaactctgaatcacctctcaacttctccaccatctccttcggcat |
14629516 |
T |
|
| Q |
211 |
cgaaccgatttctttcattcccgaa |
235 |
Q |
| |
|
|||||| ||||| | |||||||||| |
|
|
| T |
14629517 |
cgaacctatttcctccattcccgaa |
14629541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 14620083 - 14619858
Alignment:
| Q |
11 |
aacaccatccttgttccgccgtccaccgccacattcctcacactcctccactcacacaaacttccattcataacctcacatacaacaagctcctctaata |
110 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||| |||| ||||||||||||||||| | |||||| |||||||||||||||||| || ||||| | |
|
|
| T |
14620083 |
aacaccatcctggttccgccatccaccgctgcatttttcactctcctccactcacacaatttcacattcacaacctcacatacaacaagttcatctaaca |
14619984 |
T |
|
| Q |
111 |
ctaacgtgttccgcaagtaaacaaaatcaccaacccaaatcacttcaactgaaccaaactctgaatcacccttcaacttctccaccatttccttcggcat |
210 |
Q |
| |
|
| |||||||| ||||||||||| |||| ||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14619983 |
ccaacgtgttacgcaagtaaaccaaattcccaacccaaattgcttcaattgaaccaaactcagaatcacccttcaacttctccaccatctccttcggcat |
14619884 |
T |
|
| Q |
211 |
cgaaccgatttctttcattcccgaac |
236 |
Q |
| |
|
|||||| ||||| | ||||||||||| |
|
|
| T |
14619883 |
cgaacctatttcctccattcccgaac |
14619858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University