View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5880_high_14 (Length: 319)
Name: NF5880_high_14
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 132 - 302
Target Start/End: Original strand, 2041183 - 2041355
Alignment:
| Q |
132 |
tcatccctaaggtatcttgatttatttttctcagatattaaaatttgttttaata--tttcaataactaaattaggtcttaaaatttgtctgacaaacta |
229 |
Q |
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| T |
2041183 |
tcatccctaaggtatcttgatttatttttctcagatattaaaatttgttttaatatttttcaataactaaatttggtcttaagatttgtctgacaaacta |
2041282 |
T |
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| Q |
230 |
aaatcaatcttcacttnnnnnnnttataatatttacattgattatttttcctcactatttaaacattgattat |
302 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2041283 |
aaatcaatcttcacttaaaaaaatgataatatttacattgattatttttcctcactatttaaacattgattat |
2041355 |
T |
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Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 2041052 - 2041117
Alignment:
| Q |
1 |
ccatgtgttagacctacaaccagtcgagtcaccaactcaatcatcgatgacaaaaacaacatgctt |
66 |
Q |
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| T |
2041052 |
ccatgtgttagacctacaaccagtcgagtcaccaactcaatcatcgatgacaaaaacaacatgctt |
2041117 |
T |
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