View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5880_high_16 (Length: 309)

Name: NF5880_high_16
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5880_high_16
NF5880_high_16
[»] chr6 (1 HSPs)
chr6 (15-309)||(1436401-1436695)


Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 309
Target Start/End: Original strand, 1436401 - 1436695
Alignment:
Q  15 aatattaatgggtatatcctaattcactctatgtatacctcttatcccttctcaaaccaaatatacaagcttcttgtgtcaattatagacagccaataac 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1436401 aatatgaatgggtatatcctaattcactctatgtatacctcttatcccttctcaaaccaaatatacaagcttcttgtgtcaattatagacagccaataac 1436500  T
Q  115 caatttattatttcaatgaattagttggttataatgcaaggaaaaataattccatgtagagtcttctttcgttcctaacaaattcaatgaaatcagtcaa 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1436501 caatttattatttcaatgaattagttggttataatgcaaggaaaaataattccatgtagagtcttctttcgttcctaacaaattcaatgaaatcagtcaa 1436600  T
Q  215 agaaaccaaatcaagacacaaatcaaatcacaagtattgttgaggaaacaataacaactttgtaaccttcactagaagacaaattaacttgaaat 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1436601 agaaaccaaatcaagacacaaatcaaatcacaagtattgttgaggaaacaataacaactttgtaaccttcactagaagacaaattaacatgaaat 1436695  T

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