View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5880_high_17 (Length: 308)
Name: NF5880_high_17
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 289
Target Start/End: Original strand, 37914589 - 37914867
Alignment:
| Q |
11 |
cacagacatgcttcatcatcacgagatcaaattctatcataacgaaacagtaattatgaaggtgatagagcagactcaaatttcaccaccaccaagttca |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914589 |
cacaaacatgcttcatcatcacgagatcaaattctatcataacgaaacagtaattatgaaggtgatagagcagactcaaatttcaccaccaccaagttca |
37914688 |
T |
|
| Q |
111 |
cttccatcaccaacgagaatccctctcactttctttgacatttcttggttttactgcaaannnnnnnttaaacgcatcttcttctaccactttcctcacc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37914689 |
cttccatcaccaacgagaatccctctcactttctttgacatttcttggttttactgcaaacccccccttaaacgcatcttcttctaccactttcctcacc |
37914788 |
T |
|
| Q |
211 |
caactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacacttctttccctt |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914789 |
caactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacacttctttccctt |
37914867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 31 - 289
Target Start/End: Original strand, 37906446 - 37906704
Alignment:
| Q |
31 |
acgagatcaaattctatcataacgaaacagtaattatgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaacgagaat |
130 |
Q |
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|||||| ||||||| |||| ||| | ||||| || |||||||| ||||| || | ||| || |||||||||||| |||||||||||||||||| | | | |
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| T |
37906446 |
acgagaccaaattcaatcacaacaacacagttatgatgaaggtaatagaacatagccaagttgcaccaccaccaaattcacttccatcaccaacaacact |
37906545 |
T |
|
| Q |
131 |
ccctctcactttctttgacatttcttggttttactgcaaannnnnnnttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaa |
230 |
Q |
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||||||||| ||||| |||||||| ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37906546 |
ccctctcaccttcttcgacatttcatggttttactgtcaacccactgttaaacgtatcttcttctaccactttcctcacccaactcatcacttcctccaa |
37906645 |
T |
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| Q |
231 |
acaacacttcctattctcaaacactcactttccttaacccttcaacacttctttccctt |
289 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37906646 |
acaacacttcctattctcaaacactcactttccttaacccttcaacacttctttccctt |
37906704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 181 - 283
Target Start/End: Complemental strand, 37961472 - 37961370
Alignment:
| Q |
181 |
aacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacactt |
280 |
Q |
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|||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||| | |||||| |
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| T |
37961472 |
aacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacactt |
37961373 |
T |
|
| Q |
281 |
ctt |
283 |
Q |
| |
|
||| |
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|
| T |
37961372 |
ctt |
37961370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 37961584 - 37961526
Alignment:
| Q |
66 |
atgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaac |
124 |
Q |
| |
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|||||||||||||| || | |||| || |||||||||||| ||||||| |||||||||| |
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| T |
37961584 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaac |
37961526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 286
Target Start/End: Original strand, 3782862 - 3782970
Alignment:
| Q |
178 |
ttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaaca |
277 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||||||||| |||||| | ||||| |||| |
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| T |
3782862 |
ttaaacgcatcttcttctaccactttcctcatccaactcatcactttctccaaacaatacttcccattctcaaacactctctttccatcaccctcgaaca |
3782961 |
T |
|
| Q |
278 |
cttctttcc |
286 |
Q |
| |
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||||||||| |
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| T |
3782962 |
cttctttcc |
3782970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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