View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5880_high_2 (Length: 686)

Name: NF5880_high_2
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5880_high_2
NF5880_high_2
[»] chr1 (26 HSPs)
chr1 (16-671)||(6371877-6372533)
chr1 (16-319)||(6366679-6366983)
chr1 (16-310)||(6380297-6380592)
chr1 (16-310)||(6420485-6420780)
chr1 (16-319)||(6404029-6404333)
chr1 (16-306)||(6379084-6379375)
chr1 (16-281)||(6399345-6399610)
chr1 (16-310)||(6358785-6359080)
chr1 (16-312)||(6348741-6349038)
chr1 (16-310)||(6415328-6415623)
chr1 (20-319)||(6391044-6391344)
chr1 (16-312)||(6357409-6357706)
chr1 (23-302)||(6347660-6347940)
chr1 (26-281)||(6427853-6428108)
chr1 (571-660)||(6414276-6414368)
chr1 (568-666)||(6426923-6427021)
chr1 (576-660)||(6403348-6403432)
chr1 (571-649)||(6346865-6346943)
chr1 (613-665)||(6357832-6357884)
chr1 (571-660)||(6356364-6356456)
chr1 (606-665)||(6379501-6379560)
chr1 (576-665)||(6366076-6366168)
chr1 (606-660)||(6397201-6397255)
chr1 (396-447)||(6358279-6358327)
chr1 (47-281)||(6439461-6439696)
chr1 (606-660)||(6419691-6419745)


Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 16 - 671
Target Start/End: Complemental strand, 6372533 - 6371877
Alignment:
Q  16 ataagaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6372533 ataagaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttc 6372434  T
Q  116 aaagaatgatctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctt 215  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6372433 aaagaatgatctttcacaaaccgctgccaaccgtccatgaagtacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctt 6372334  T
Q  216 taagggtcacattttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgcataaaagtataaatttccatttgagattaagataa 315  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6372333 taagggtcacattttctggcaacttcttctttaagttgtctgagaatgttttaggaagtgcctgcataaaagtataaatttccatttgagattaagataa 6372234  T
Q  316 attgcctgtaaaacggctattaatcatcacaagtacatgatttcagcaatgatttacaggaaaagctaaaaactgaaaagctgaaaactttgttcaaaag 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6372233 attgcctgtaaaacggctattaatcatcacaagtacatgatttcagcaatgatttacaggaaaagctaaaaa-tgaaaagctgaaaactttgttcaaaag 6372135  T
Q  416 aactaataagtgcagttaaaggaattgtaaaatgat--nnnnnnnnttatgaacatgagatgaagtgcatgtactcaatagtcaacaccctaataaagaa 513  Q
    ||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6372134 aactaataagtgcagttaaaggaattgtaaaatgataaaaaaaaaattatgaacatgagatgaagtgcatgtactcaatagtcaacaccctaataaagaa 6372035  T
Q  514 aagtttcatttttctttcatttagaacaatggaaggaaagagaaagagcaaaaagaatactaacaagttattgttgaaaatgggtggtgctcagaaatag 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6372034 aagtttcatttttctttcatttagaacaatggaaggaaagagaaagagcaaaaagaatactaacaagttgttgttgaaaatgggtggtgctcagaaatag 6371935  T
Q  614 ggtgaaatggatgaactgaaaatggatccagtaaatctcttcctcccgtgatcttctt 671  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6371934 ggtgaaatggatgaactgaaaatggttccagtaaatctcttcctcccgtgatcttctt 6371877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 6366983 - 6366679
Alignment:
Q  16 ataagaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttc 115  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  6366983 ataagaagctgctttttcacagaagctttctccattaaagattaaaacctcaaagagtgattcaccgttgtacttaaagacaaggaaatcattctctttc 6366884  T
Q  116 aaagaatgatctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctt 215  Q
    ||||| ||||||||||| || ||  ||||||||||||||||||| ||||  |||  ||||||  |||||||||||||||| |||||||||||||||||||    
T  6366883 aaagagtgatctttcacgaaacgtcgccaaccgtccacgaaataaacagattcacctctagtattcagccctatattccacacaactccactaggacctt 6366784  T
Q  216 taagggtcacattttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgc-ataaaagtataaatttccatttgagattaagata 314  Q
    |||| ||||||||||||||||| ||||||||||| ||||| |||||| |||||||||| |||||| |||||  |||||||||||| |||||| |||||||    
T  6366783 taagtgtcacattttctggcaacttcttctttaaattgtccgagaatattttaggaagggcctgcaataaatttataaatttccagttgagactaagata 6366684  T
Q  315 aattg 319  Q
     ||||    
T  6366683 cattg 6366679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 6380592 - 6380297
Alignment:
Q  16 ataagaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttc 115  Q
    |||||||||||| |||||||| || || ||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| | ||||    
T  6380592 ataagaagctgccttctcacagaaactatctccatcaaagattaaaacctcaaagagtgatttaccgttgtacttaaagacaaggaaatcattctgtttc 6380493  T
Q  116 aaagaatgatctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctt 215  Q
    ||||| |||||||| |  || || | |||||||||||| || || ||| |||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  6380492 aaagagtgatctttaatgaatcgtttccaaccgtccacaaagtaaacaatatcatctctagttgtcagccctatattccacacaactccactaggacctt 6380393  T
Q  216 taagggtcacattttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgc-ataaaagtataaatttccatttgagattaa 310  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||    
T  6380392 taagggtcacattttctggcaacttcttctttaaattgtctgagaatgttttaggaagtgcctgcaattaaaatataaatttccatctgagattaa 6380297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 6420780 - 6420485
Alignment:
Q  16 ataagaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttc 115  Q
    |||||||| ||| |||||||| ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6420780 ataagaagttgccttctcacaaaagttatctccatcaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattctctttc 6420681  T
Q  116 aaagaatgatctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctt 215  Q
    ||||||||||||||||| || |||| ||||||| ||||||| || ||||||| || ||||||||||| ||| |||| ||| ||| ||||||||||||| |    
T  6420680 aaagaatgatctttcacgaatcgctcccaaccgcccacgaagtaaacagtattatctctagttgtcaacccaatatcccacacagctccactaggaccct 6420581  T
Q  216 taagggtcacattttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgca-taaaagtataaatttccatttgagattaa 310  Q
    |||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||| | ||| ||||||||||||| |||||||||    
T  6420580 taagggtcacattttctggcaacttcttttttaaattgtctgaaaatgttttaggaagtgcctgcagttaaaatataaatttccatctgagattaa 6420485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 16 - 319
Target Start/End: Complemental strand, 6404333 - 6404029
Alignment:
Q  16 ataagaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttc 115  Q
    |||||||| ||| |||||||| ||| | |||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  6404333 ataagaagttgccttctcacaaaagttatctcgatcaaagattaaaacctcaaagagtgattcaccattgtacttaaaaacaaggaaatcattctctttc 6404234  T
Q  116 aaagaatgatctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctt 215  Q
    |||||||||||||||||||| || ||||||||||||  ||| || || |||| || |||||||||||| ||||||||||| |||||||||||||||||||    
T  6404233 aaagaatgatctttcacaaatcgttgccaaccgtccgtgaagtaaaccgtataatctctagttgtcagtcctatattccaaacaactccactaggacctt 6404134  T
Q  216 taagggtcacattttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgc-ataaaagtataaatttccatttgagattaagata 314  Q
    |||||||||||||||| ||||| || |||||||| |||||||| ||||||||||||||||||||| || |||  |||||||||| ||||| |||||||||    
T  6404133 taagggtcacattttcaggcaacttgttctttaaattgtctgaaaatgttttaggaagtgcctgcaattaaaacataaatttccttttgatattaagata 6404034  T
Q  315 aattg 319  Q
     ||||    
T  6404033 cattg 6404029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 6379375 - 6379084
Alignment:
Q  16 ataagaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttc 115  Q
    |||||||||||||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||||    
T  6379375 ataagaagctgctttctcgcagaagctttctccatgaaagattaaaacctcaaacagtgattcaccattgtacttgaagacaaggaaatcattctgtttc 6379276  T
Q  116 aaagaatgatctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctt 215  Q
    ||||| ||||||||||| ||  | |||||||| |||  | | || |  ||||||| |||||||||||||||||||| ||| |||||||||||||||||||    
T  6379275 aaagagtgatctttcacgaattgttgccaaccatccgtggagtaaattgtatcatctctagttgtcagccctatatcccacacaactccactaggacctt 6379176  T
Q  216 taagggtcacattttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgc-ataaaagtataaatttccatttgaga 306  Q
    |||||||||||||| ||||||| || |||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6379175 taagggtcacatttgctggcaacttgttctttaaattgtctgaaaatgttttaggaagtgcctgcaataaaagtataaatttccatttgaga 6379084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 6399610 - 6399345
Alignment:
Q  16 ataagaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttc 115  Q
    |||||||| ||| |||||||| || || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6399610 ataagaagttgccttctcacaaaaactatttccatcaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattctctttc 6399511  T
Q  116 aaagaatgatctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctt 215  Q
    ||||| ||||| ||||| ||  | ||||||||||||||||| || ||||||| || |||||||||||| ||||||||||| |||||||||||||||||||    
T  6399510 aaagagtgatcgttcacgaattgttgccaaccgtccacgaagtaaacagtattatctctagttgtcagtcctatattccacacaactccactaggacctt 6399411  T
Q  216 taagggtcacattttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgca 281  Q
    |||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  6399410 taagagtcacattttctggcaacttcttctttaaattgtctgaaaatgttttaggaagtgcctgca 6399345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 6359080 - 6358785
Alignment:
Q  16 ataagaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttc 115  Q
    |||||||||| |||||||||| ||||||||||||| |||||| ||||| |||||| |||| ||||||||||| |||||||||||||||||||| ||||||    
T  6359080 ataagaagcttctttctcacagaagctttctccatcaaagatcaaaacatcaaagtgtgactcaccattgtaattaaagacaaggaaatcattatctttc 6358981  T
Q  116 aaagaatgatctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctt 215  Q
    ||||| ||||| ||||| || || |||||||||| || ||| || |||||||| | ||||||| | |||||||| |||||| |||| ||||  |||||||    
T  6358980 aaagagtgatcgttcacgaatcgttgccaaccgttcaggaagtaaacagtatcgtctctagttatgagccctattttccatgcaacaccaccgggacctt 6358881  T
Q  216 taagggtcacattttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgc-ataaaagtataaatttccatttgagattaa 310  Q
    |||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  6358880 taagggtcacattttctggcaacttcttatttaaattgtctgaaaatgttttaggaagtgcctgcaataaaagtataaatttcaatttgagattaa 6358785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 6349038 - 6348741
Alignment:
Q  16 ataagaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttc 115  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||  |||||    
T  6349038 ataagaagcttctttctcacagaagctttctccatcaaagattaaaacctcgaagtgtgattcaccattgtacttacagacaaggaaatcattagctttc 6348939  T
Q  116 aaagaatgatctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctt 215  Q
    || || ||||| ||||  ||  | ||||||||||||||||| || |||    ||| |||||||||||||| ||||||||||  |||||||||||||||||    
T  6348938 aacgagtgatcgttcatgaattgttgccaaccgtccacgaagtaaacaaagccatctctagttgtcagccttatattccatgtaactccactaggacctt 6348839  T
Q  216 taagggtcacattttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgc-ataaaagtataaatttccatttgagattaaga 312  Q
    |||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||| |||||    
T  6348838 taagggtcacattttctggcaacttcttatttaaattgtctgaaaatgttttaggaagtgcctgcaataaaagtataaatttccaaatgagaataaga 6348741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 6415623 - 6415328
Alignment:
Q  16 ataagaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttc 115  Q
    |||||||||||| |||||||| || ||   ||||| |||||||||||| ||||| |  ||||||||||||||||| |||| |||||||||| | ||||||    
T  6415623 ataagaagctgccttctcacagaaactacgtccatcaaagattaaaacttcaaacaacgattcaccattgtacttgaagaaaaggaaatcactctctttc 6415524  T
Q  116 aaagaatgatctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctt 215  Q
    ||||| ||||| ||||||||  | ||||||||||    ||| || ||||| |||| | |||||||||||||||||||||| |||||||||||||||||||    
T  6415523 aaagagtgatcattcacaaattgttgccaaccgtttgtgaagtaaacagtgtcatctatagttgtcagccctatattccacacaactccactaggacctt 6415424  T
Q  216 taagggtcacattttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgc-ataaaagtataaatttccatttgagattaa 310  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || ||| || |||||||||| |||||||||    
T  6415423 taagggtcacattttctggcaacttcttctttaagttgtctgaaaatgttttaggaagtgcctgcaattaaaatacaaatttccatctgagattaa 6415328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 20 - 319
Target Start/End: Complemental strand, 6391344 - 6391044
Alignment:
Q  20 gaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttcaaag 119  Q
    ||||| ||||||||||| ||||||||||| | ||||||||| || |  || | |||||| |||||||||||||||||   ||||||||| ||||||| ||    
T  6391344 gaagccgctttctcacaaaagctttctccttgaaagattaacacattgaacaatgattcgccattgtacttaaagactgcgaaatcattctctttcagag 6391245  T
Q  120 aatgatctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctttaag 219  Q
    |||||||| |  ||||| | ||||||||||||||||| || ||||||| || |||||||  |||||||| ||||||| ||||||||||||||||||||||    
T  6391244 aatgatctcttgcaaactgatgccaaccgtccacgaagtaaacagtattatctctagtttgcagccctacattccattcaactccactaggacctttaag 6391145  T
Q  220 ggtcacattttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgc-ataaaagtataaatttccatttgagattaagataaatt 318  Q
    |||||||||||||||||  |||||||| || ||||||||||||||| |||||||||||||| ||||||  ||||||||||||||||||||| |||| |||    
T  6391144 ggtcacattttctggcagcttcttcttcaaattgtctgagaatgttctaggaagtgcctgcaataaaatgataaatttccatttgagattatgatacatt 6391045  T
Q  319 g 319  Q
    |    
T  6391044 g 6391044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 6357706 - 6357409
Alignment:
Q  16 ataagaagctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttc 115  Q
    |||||||||||| |||||||| || || ||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  6357706 ataagaagctgccttctcacagaaactatctccatgaaagattaaaacttcaaagagtgactccccattgtacttaaagacaaggaaatcattctctttc 6357607  T
Q  116 aaagaatgatctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctt 215  Q
    ||||| ||||||||||| || |  ||||| || | |  ||| || |  ||||||| ||||| ||||||||| | |||||| |||||||||||||||||||    
T  6357606 aaagagtgatctttcacgaatctttgccatccattcgtgaagtaaatggtatcatctctagctgtcagcccaacattccacacaactccactaggacctt 6357507  T
Q  216 taagggtcacattttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgc-ataaaagtataaatttccatttgagattaaga 312  Q
    |||||||||| ||  ||||||| ||||||||||| |||||||| |||||||| ||||| |||||| |||||  |||| ||||||| |||||| |||||    
T  6357506 taagggtcacgttgcctggcaacttcttctttaaattgtctgaaaatgttttcggaagggcctgcaataaatttatagatttccagttgagactaaga 6357409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 23 - 302
Target Start/End: Complemental strand, 6347940 - 6347660
Alignment:
Q  23 gctgctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttcaaagaat 122  Q
    ||||| |||||||| || || | ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| || |    
T  6347940 gctgccttctcacagaaactatttccattaaagattaaaacctcaaagtgtgattcaccattgtacttaaatacaaggaaatcattttccttcaaggagt 6347841  T
Q  123 gatctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctttaagggt 222  Q
    | ||||| || ||  | ||||||| || |  ||| || |||||||||  ||||| |||||||||||||||||| |||| ||| ||||||| ||||| |||    
T  6347840 ggtctttgacgaattgttgccaactgttcgtgaagtaaacagtatcacctctagctgtcagccctatattccacacaattccgctaggacatttaatggt 6347741  T
Q  223 cacattttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgc-ataaaagtataaatttccattt 302  Q
    |||||||||||| || ||||||||||| |||||||| |||||||| |||||||||||| | |||||||||||| |||||||    
T  6347740 cacattttctggtaacttcttctttaaattgtctgaaaatgttttcggaagtgcctgcaacaaaagtataaatgtccattt 6347660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 26 - 281
Target Start/End: Complemental strand, 6428108 - 6427853
Alignment:
Q  26 gctttctcacataagctttctccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttcaaagaatgat 125  Q
    |||||||| |||||| | || |||| ||| |||||||| ||||| | |||||| |||||||| || || | |||||||||| | ||||||||||| ||||    
T  6428108 gctttctcgcataaggtctcaccatgaaatattaaaacttcaaacaatgattctccattgtatttgaaaaaaaggaaatcactctctttcaaagagtgat 6428009  T
Q  126 ctttcacaaaccgctgccaaccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctttaagggtcac 225  Q
    | |||||||| |  ||||||||||    ||| || ||||| || | | |||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  6428008 cattcacaaatccttgccaaccgtttgtgaagtaaacagtgtcctctttagttgtcagccctatattccacacaactccactaggacctttaaggttcac 6427909  T
Q  226 attttctggcaaattcttctttaagttgtctgagaatgttttaggaagtgcctgca 281  Q
    |||||| ||||| ||||| ||||| |||||||| ||||||||||||||||||||||    
T  6427908 attttcaggcaacttcttttttaaattgtctgaaaatgttttaggaagtgcctgca 6427853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 571 - 660
Target Start/End: Complemental strand, 6414368 - 6414276
Alignment:
Q  571 tactaacaagttattgttgaaaatgggtggtgctc---agaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctccc 660  Q
    |||| ||| ||| ||||||||||| |||||||||    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6414368 tacttacaggttgttgttgaaaattggtggtgctatgaagaaatagggtgaaatggatgaactgaaaatggttccagtaaatctcttcctccc 6414276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 568 - 666
Target Start/End: Complemental strand, 6427021 - 6426923
Alignment:
Q  568 gaatactaacaagttattgttgaaaatgggtggtgctcagaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctcccgtgatc 666  Q
    ||||||||||||||| |||||||||||  ||| |||  |||||| | |||||||||||||||||||||||| |||||||||| |||||||||| |||||    
T  6427021 gaatactaacaagttgttgttgaaaatcagtgttgcgaagaaattgagtgaaatggatgaactgaaaatgggtccagtaaatgtcttcctcccatgatc 6426923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 576 - 660
Target Start/End: Complemental strand, 6403432 - 6403348
Alignment:
Q  576 acaagttattgttgaaaatgggtggtgctcagaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctccc 660  Q
    ||||||| |||||||||||    |||||| |||||||| |||||||||||||| ||||||||| |||||||||| ||||||||||    
T  6403432 acaagttgttgttgaaaatcaaaggtgctaagaaatagagtgaaatggatgaattgaaaatggttccagtaaatatcttcctccc 6403348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 571 - 649
Target Start/End: Complemental strand, 6346943 - 6346865
Alignment:
Q  571 tactaacaagttattgttgaaaatgggtggtgctcagaaatagggtgaaatggatgaactgaaaatggatccagtaaat 649  Q
    |||| |||||||  || ||||||| |||| |||||||||| ||||||||||||||||||||||||||| |||| |||||    
T  6346943 tacttacaagttgatggtgaaaatcggtgatgctcagaaaaagggtgaaatggatgaactgaaaatgggtccaataaat 6346865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 613 - 665
Target Start/End: Complemental strand, 6357884 - 6357832
Alignment:
Q  613 gggtgaaatggatgaactgaaaatggatccagtaaatctcttcctcccgtgat 665  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||| ||||    
T  6357884 gggtgaaatggatgaactgaaaatgggtccagtaaatgtcttcctcccatgat 6357832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 660
Target Start/End: Complemental strand, 6356456 - 6356364
Alignment:
Q  571 tactaacaagttattgttgaaaatgggtggtgctc---agaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctccc 660  Q
    |||| ||||||| ||||||||||| ||||||| |    |||||| || ||||||| ||||||||||||||| ||||||||||||||| |||||    
T  6356456 tactcacaagttgttgttgaaaatcggtggtggtttgaagaaattggatgaaatgaatgaactgaaaatgggtccagtaaatctctttctccc 6356364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 606 - 665
Target Start/End: Complemental strand, 6379560 - 6379501
Alignment:
Q  606 agaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctcccgtgat 665  Q
    |||||| |||||||||||||||| || |||||| |||||||||| |||||||||| ||||    
T  6379560 agaaattgggtgaaatggatgaattggaaatgggtccagtaaatgtcttcctcccatgat 6379501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 576 - 665
Target Start/End: Complemental strand, 6366168 - 6366076
Alignment:
Q  576 acaagttattgttgaaaatgggtggtgctc---agaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctcccgtgat 665  Q
    ||||||| ||||||||||| |||||||||    ||||| | ||| ||||||||||| |||||||||  ||| |||||||||||||||| ||||    
T  6366168 acaagttgttgttgaaaatcggtggtgctttgaagaaaaatggtaaaatggatgaattgaaaatgggaccaataaatctcttcctcccatgat 6366076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 606 - 660
Target Start/End: Complemental strand, 6397255 - 6397201
Alignment:
Q  606 agaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctccc 660  Q
    |||||| ||||||||||||||||||| |||||| |||||||||| ||||| ||||    
T  6397255 agaaattgggtgaaatggatgaactggaaatgggtccagtaaatatcttcttccc 6397201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 447
Target Start/End: Complemental strand, 6358327 - 6358279
Alignment:
Q  396 ctgaaaactttgttcaaaagaactaataagtgcagttaaaggaattgtaaaa 447  Q
    ||||||||||| ||||||||||||||   |||||||||||||||||||||||    
T  6358327 ctgaaaactttcttcaaaagaactaa---gtgcagttaaaggaattgtaaaa 6358279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 281
Target Start/End: Complemental strand, 6439696 - 6439461
Alignment:
Q  47 ccattaaagattaaaacctcaaagagtgattcaccattgtacttaaagacaaggaaatcattttctttcaaagaa-tgatctttcacaaaccgctgccaa 145  Q
    |||| ||| |||||||||||||| |  |||| |||||||||||||||||  ||||| || || |||||||||||| || ||||| |||||  | | |||     
T  6439696 ccatcaaatattaaaacctcaaacaacgatttaccattgtacttaaagaacaggaagtcgttctctttcaaagaagtggtctttaacaaattgttcccac 6439597  T
Q  146 ccgtccacgaaatacacagtatcatttctagttgtcagccctatattccatacaactccactaggacctttaagggtcacattttctggcaaattcttct 245  Q
    || | |  ||| || |  ||| | | |||| |||| |||||||||||||||   ||||||| ||||||||| |||  ||||||||| ||||  ||||| |    
T  6439596 ccttgcgtgaagtaaaatgtaccgtctctacttgttagccctatattccatgtcactccaccaggaccttttaggaccacattttcaggcagcttctttt 6439497  T
Q  246 ttaagttgtctgagaatgttttaggaagtgcctgca 281  Q
    | |  |||| ||| |||||||| ||||| |||||||    
T  6439496 tgacattgtttgaaaatgttttgggaagagcctgca 6439461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 606 - 660
Target Start/End: Complemental strand, 6419745 - 6419691
Alignment:
Q  606 agaaatagggtgaaatggatgaactgaaaatggatccagtaaatctcttcctccc 660  Q
    |||||| |||||||||| ||||||||||||| | |||||||||| ||||| ||||    
T  6419745 agaaattgggtgaaatgaatgaactgaaaattgttccagtaaatatcttcttccc 6419691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University