View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5880_high_27 (Length: 239)
Name: NF5880_high_27
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1436951 - 1437172
Alignment:
| Q |
1 |
ttgtgttcttaaagaaataaacaagtcctataaagaagcagacactatcttaatcaggtgatgtataatttttcatataagaagtagacgattcaccaat |
100 |
Q |
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| T |
1436951 |
ttgtgttcttaaagaaataaacaagtcctataaagaagcagacactatcttaatcaggtgatgtataatttttcatataagaagtagacgattcaccaat |
1437050 |
T |
|
| Q |
101 |
tccatgatagggaatctcttaaaaatgatacaccaacgacaatttcannnnnnnnnngtatgttatgtttacctaaaaacctatattggatttaatggga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1437051 |
tccatgatagggaatctcttaaaaatgatacaccaacgacaatttcatttcttttgtgtatgttatgtttacctaaaaacctatattggaattaatggga |
1437150 |
T |
|
| Q |
201 |
tgtctcatccttaaccactagt |
222 |
Q |
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|||||||||| ||||||||||| |
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| T |
1437151 |
tgtctcatccctaaccactagt |
1437172 |
T |
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