View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5880_high_28 (Length: 238)
Name: NF5880_high_28
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 1277525 - 1277708
Alignment:
| Q |
1 |
atatatatgctgaccttaaagcttgagaaaatgaccgggtgaagtagaaagatttcgaaggttgggattacaacattggtcaatgtgtcactcaaacgtg |
100 |
Q |
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| T |
1277525 |
atatatatgctgaccttaaagcttgagaaaatgaccgggtgaagtagaaggatgtcgaaggttgggattacaacattggtcaatgtatcatgcaaacgtg |
1277624 |
T |
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| Q |
101 |
tttcttgcaatatctcacgtgttttagcacgtaagaactcgccatcaaacttcggacccggggtggtatgagtccaattcctgc |
184 |
Q |
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| T |
1277625 |
tttcttgcaatatctcacgtgttttagcacgtaagaactcgccatcaaacttcggacccggggtggtatgagtccaattcctgc |
1277708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 1196921 - 1197047
Alignment:
| Q |
13 |
accttaaagcttgagaaaatgaccgggtgaagtagaaagatttcgaaggttgggattacaacattggtcaatgtgtcactcaaacgtgtttcttgcaata |
112 |
Q |
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| T |
1196921 |
accttaaagcttgagaatataactgggtgaacttgcaagatgtcgaaggcagggattacaacattggtcaatgtgtcactcaaacgtgtctcttgcaata |
1197020 |
T |
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| Q |
113 |
tctcacgtgttttagcacgtaagaact |
139 |
Q |
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| T |
1197021 |
tctcgcgtgctttttcatgtaagaact |
1197047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 1243210 - 1243290
Alignment:
| Q |
59 |
aggttgggattacaacattggtcaatgtgtcactcaaacgtgtttcttgcaatatctcacgtgttttagcacgtaagaact |
139 |
Q |
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| T |
1243210 |
aggttgggattacaacattggtcaatgtatcatgcaatcgtgtttcttgcaatatctcacgtgctttatcatgtaagaact |
1243290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 1253909 - 1253989
Alignment:
| Q |
59 |
aggttgggattacaacattggtcaatgtgtcactcaaacgtgtttcttgcaatatctcacgtgttttagcacgtaagaact |
139 |
Q |
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| T |
1253909 |
aggttgggattacaacattggtcaatgtatcatgcaatcgtgtttcttgcaatatctcacgtgctttatcatgtaagaact |
1253989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 1227531 - 1227665
Alignment:
| Q |
3 |
atatatgctgaccttaaagcttgagaaaatgaccgggtgaagtagaaagatttcgaaggttgggattacaacattggtcaatgtgtcactcaaacgtgtt |
102 |
Q |
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| T |
1227531 |
atatatgctgaccttaaacgttgagaaaacaattgggtgaagtttcaggatgtcgaagcttgtgattacaagattggtcaatgtgtcatgtaatcttgtt |
1227630 |
T |
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| Q |
103 |
tcttgcaatatctcacgtgttttagcacgtaagaa |
137 |
Q |
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| T |
1227631 |
tcttgtaatatctcacctactttatcacgtaagaa |
1227665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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