View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5880_high_4 (Length: 560)
Name: NF5880_high_4
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 278 - 545
Target Start/End: Complemental strand, 6936771 - 6936503
Alignment:
| Q |
278 |
tgattaatttattggagataaagctcaattactaacatgagggacatagttagtactacattaagagaactataagtatccctcnnnnnnnt--aaaatt |
375 |
Q |
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| T |
6936771 |
tgattaatttattggagataaagctcaattactaacatgagggacatagttagcactacattaagaaaactataagtatccctcaaaaaaaataaaaatt |
6936672 |
T |
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| Q |
376 |
aagagaactaagtaccaactgaataaatatacgattgattatgttactgctataattgtttataaagttttgcaagtaacttttgtgttgatcatttggt |
475 |
Q |
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| T |
6936671 |
aagagaactaagtaccaactgaataaatatacgattgattatgttactgctataattgtttataaagttttgcaagta-cttttgtgttgatcatttggt |
6936573 |
T |
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| Q |
476 |
gtgaagagtgaagaattgaaggtaatgttgaccctttgatgtgtagctattggtgacttgtaaaagaagt |
545 |
Q |
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| T |
6936572 |
gtgaagagtgaagaattgaaggtaatgttgaccctttgatgtgtagctattggtgacttgtaaaagaagt |
6936503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 6937044 - 6936868
Alignment:
| Q |
9 |
agcataggcacgccatttttgctaataattaatataaatttannnnnnnacacaatcaattaatttacttaagtcatgtatggtnnnnnnnnta---gat |
105 |
Q |
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| T |
6937044 |
agcataggcacgccatttttgctaataattaatataaatttatttttttacacaatcaattaatttacttaagtgatgtatggtaaaaaaaaaaaaagat |
6936945 |
T |
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| Q |
106 |
gtttgataagctagctgatgacggataaactagcttatagtaaagaatatgttgccctattggatttatagtgtttg |
182 |
Q |
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| T |
6936944 |
gtttgataagttaactgatgacggataaactagcttatagtaaagaatatgttgccctattggatttataatgtttg |
6936868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 505
Target Start/End: Complemental strand, 6930169 - 6930039
Alignment:
| Q |
376 |
aagagaactaagtaccaactgaataaatatacgattgattatgttactgctataattgtttataaagttttgcaagtaacttttgtgttgatcatttggt |
475 |
Q |
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|||||||| |||||||||| ||||||| |||| ||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||| | |||||| |
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| T |
6930169 |
aagagaacaaagtaccaaccgaataaagatactattgattatgttactgctagaattgtttataaagttatgcaagtaacttttatgttgaccctttggt |
6930070 |
T |
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| Q |
476 |
gtgaagagtgaagaattgaagg-taatgttg |
505 |
Q |
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| T |
6930069 |
ctgaagagttaaaaattgaaggctaatgttg |
6930039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 450 - 497
Target Start/End: Complemental strand, 43029263 - 43029216
Alignment:
| Q |
450 |
agtaacttttgtgttgatcatttggtgtgaagagtgaagaattgaagg |
497 |
Q |
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| T |
43029263 |
agtaacttttatgttgaccctttggtgtgaagagtgaagaattgaagg |
43029216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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