View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5880_high_6 (Length: 471)

Name: NF5880_high_6
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5880_high_6
NF5880_high_6
[»] chr6 (12 HSPs)
chr6 (87-287)||(30780268-30780468)
chr6 (86-287)||(25054438-25054639)
chr6 (87-287)||(17193740-17193940)
chr6 (87-286)||(3962538-3962737)
chr6 (232-286)||(17193740-17193794)
chr6 (85-139)||(17193887-17193941)
chr6 (85-139)||(25054437-25054491)
chr6 (234-288)||(25054586-25054640)
chr6 (85-139)||(30780267-30780321)
chr6 (87-139)||(3962538-3962590)
chr6 (234-286)||(3962685-3962737)
chr6 (234-286)||(30780416-30780468)
[»] chr8 (8 HSPs)
chr8 (87-289)||(29739906-29740108)
chr8 (87-286)||(10756450-10756649)
chr8 (86-139)||(29739908-29739961)
chr8 (87-139)||(10756450-10756502)
chr8 (234-286)||(10756597-10756649)
chr8 (234-286)||(29740056-29740108)
chr8 (83-143)||(11128887-11128947)
chr8 (236-283)||(11128893-11128940)
[»] chr5 (13 HSPs)
chr5 (87-286)||(11772741-11772940)
chr5 (87-286)||(17534545-17534744)
chr5 (85-159)||(8881020-8881094)
chr5 (234-287)||(8881021-8881074)
chr5 (87-139)||(11772741-11772793)
chr5 (234-286)||(11772888-11772940)
chr5 (234-286)||(17534545-17534597)
chr5 (87-139)||(17534692-17534744)
chr5 (244-288)||(8881095-8881139)
chr5 (86-129)||(8881095-8881138)
chr5 (14-62)||(24124921-24124969)
chr5 (14-68)||(17333479-17333533)
chr5 (257-287)||(11772956-11772986)
[»] chr3 (10 HSPs)
chr3 (88-287)||(34630588-34630786)
chr3 (87-213)||(46905406-46905529)
chr3 (207-286)||(46906240-46906319)
chr3 (85-139)||(34630587-34630641)
chr3 (234-285)||(34630735-34630786)
chr3 (236-286)||(22899519-22899569)
chr3 (87-137)||(22899519-22899569)
chr3 (234-286)||(46905406-46905458)
chr3 (87-139)||(46906267-46906319)
chr3 (19-55)||(1780320-1780356)
[»] chr4 (4 HSPs)
chr4 (90-286)||(51268324-51268521)
chr4 (87-139)||(51268324-51268376)
chr4 (234-283)||(51268472-51268521)
chr4 (16-68)||(52724907-52724959)
[»] chr2 (8 HSPs)
chr2 (298-455)||(3266800-3266960)
chr2 (16-87)||(3266961-3267032)
chr2 (236-290)||(18900620-18900674)
chr2 (86-143)||(18900623-18900680)
chr2 (19-68)||(31092853-31092902)
chr2 (85-137)||(45627808-45627860)
chr2 (236-287)||(45627809-45627860)
chr2 (85-137)||(44995642-44995694)
[»] chr7 (8 HSPs)
chr7 (125-213)||(43405484-43405572)
chr7 (208-286)||(43406290-43406368)
chr7 (16-68)||(27274971-27275023)
chr7 (19-55)||(32515310-32515346)
chr7 (87-139)||(43406316-43406368)
chr7 (256-287)||(43405458-43405489)
chr7 (371-428)||(12641366-12641423)
chr7 (19-55)||(33438176-33438212)
[»] chr1 (2 HSPs)
chr1 (88-143)||(45970002-45970057)
chr1 (236-285)||(45970002-45970051)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 87 - 287
Target Start/End: Complemental strand, 30780468 - 30780268
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccggcaacct 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30780468 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccgacaacct 30780369  T
Q  187 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30780368 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 30780269  T
Q  287 t 287  Q
    |    
T  30780268 t 30780268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 86 - 287
Target Start/End: Complemental strand, 25054639 - 25054438
Alignment:
Q  86 agagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccggcaacc 185  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  25054639 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaactgacaacc 25054540  T
Q  186 taatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttct 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25054539 taatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 25054440  T
Q  286 ct 287  Q
    ||    
T  25054439 ct 25054438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 87 - 287
Target Start/End: Original strand, 17193740 - 17193940
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccggcaacct 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  17193740 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataatatgttgacacatcatccccatcctttgtttaattaaccgacaacct 17193839  T
Q  187 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17193840 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17193939  T
Q  287 t 287  Q
    |    
T  17193940 t 17193940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 87 - 286
Target Start/End: Complemental strand, 3962737 - 3962538
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccggcaacct 186  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  3962737 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatctccatcctttgtttaattaaccgacaacct 3962638  T
Q  187 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3962637 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 3962538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 17193794 - 17193740
Alignment:
Q  232 tattattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17193794 tattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17193740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 17193941 - 17193887
Alignment:
Q  85 aagagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataa 139  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17193941 aagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 17193887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 25054437 - 25054491
Alignment:
Q  85 aagagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataa 139  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25054437 aagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 25054491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 25054586 - 25054640
Alignment:
Q  234 ttattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctcta 288  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25054586 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 25054640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 30780267 - 30780321
Alignment:
Q  85 aagagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataa 139  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30780267 aagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 30780321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 3962538 - 3962590
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataa 139  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3962538 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 3962590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 3962685 - 3962737
Alignment:
Q  234 ttattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3962685 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 3962737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 30780416 - 30780468
Alignment:
Q  234 ttattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30780416 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 30780468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 87 - 289
Target Start/End: Complemental strand, 29740108 - 29739906
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccggcaacct 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  29740108 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaactgacaacct 29740009  T
Q  187 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29740008 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 29739909  T
Q  287 tat 289  Q
    |||    
T  29739908 tat 29739906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 87 - 286
Target Start/End: Complemental strand, 10756649 - 10756450
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccggcaacct 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  10756649 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaactgacaacct 10756550  T
Q  187 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10756549 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 10756450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 29739908 - 29739961
Alignment:
Q  86 agagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataa 139  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29739908 agagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 29739961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 10756450 - 10756502
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataa 139  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10756450 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 10756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 10756597 - 10756649
Alignment:
Q  234 ttattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10756597 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 10756649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 29740056 - 29740108
Alignment:
Q  234 ttattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29740056 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 29740108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 11128947 - 11128887
Alignment:
Q  83 ggaagagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatg 143  Q
    |||||| ||||||||| |||| ||||||||||||||||||| ||||| ||||||| |||||    
T  11128947 ggaagaaaaatgctaaggacacactctcaaacacactcttttaacaccctccaatgacatg 11128887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 11128893 - 11128940
Alignment:
Q  236 attggagtgtgttgaaagattgtgtttgagagtttgtccttagcattt 283  Q
    ||||||| ||||| ||||| ||||||||||||| ||||||||||||||    
T  11128893 attggagggtgttaaaagagtgtgtttgagagtgtgtccttagcattt 11128940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 87 - 286
Target Start/End: Complemental strand, 11772940 - 11772741
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccggcaacct 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  11772940 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccaacaacct 11772841  T
Q  187 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11772840 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 11772741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 87 - 286
Target Start/End: Original strand, 17534545 - 17534744
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccggcaacct 186  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  17534545 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccaacaacct 17534644  T
Q  187 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17534645 aatatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17534744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 8881020 - 8881094
Alignment:
Q  85 aagagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatcccc 159  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8881020 aagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatcccc 8881094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 8881074 - 8881021
Alignment:
Q  234 ttattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctct 287  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8881074 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 8881021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 11772741 - 11772793
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataa 139  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11772741 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 11772793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 11772888 - 11772940
Alignment:
Q  234 ttattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11772888 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 11772940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 17534597 - 17534545
Alignment:
Q  234 ttattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17534597 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17534545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 17534744 - 17534692
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataa 139  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17534744 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 17534692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 8881095 - 8881139
Alignment:
Q  244 gtgttgaaagattgtgtttgagagtttgtccttagcatttctcta 288  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  8881095 gtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 8881139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 8881138 - 8881095
Alignment:
Q  86 agagaaatgctaaagacaaactctcaaacacactctttcaacac 129  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  8881138 agagaaatgctaaggacaaactctcaaacacactctttcaacac 8881095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 24124969 - 24124921
Alignment:
Q  14 agcatagggttttggcaccaatcataaaactgataagggaaagttgtaa 62  Q
    |||| |||||||||||||||||||| ||||||||||||||||| |||||    
T  24124969 agcaaagggttttggcaccaatcatgaaactgataagggaaagctgtaa 24124921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 17333479 - 17333533
Alignment:
Q  14 agcatagggttttggcaccaatcataaaactgataagggaaagttgtaatttttg 68  Q
    |||| ||||||||| |||||||||| ||||||||||||||||| ||||| |||||    
T  17333479 agcaaagggttttgacaccaatcatgaaactgataagggaaagctgtaaattttg 17333533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 287
Target Start/End: Original strand, 11772956 - 11772986
Alignment:
Q  257 gtgtttgagagtttgtccttagcatttctct 287  Q
    |||||||||||||||||||||||||||||||    
T  11772956 gtgtttgagagtttgtccttagcatttctct 11772986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 88 - 287
Target Start/End: Complemental strand, 34630786 - 34630588
Alignment:
Q  88 agaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccggcaaccta 187  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34630786 agaaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccgacaaccta 34630687  T
Q  188 atatgaaattgaaatgtattaaaaattggggtgaggtggcttcctattattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctct 287  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34630686 atatgaaattgaaatgtattaaaaatt-gggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 34630588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 87 - 213
Target Start/End: Original strand, 46905406 - 46905529
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccggcaacct 186  Q
    |||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||    
T  46905406 gagaaatgctaaggataaactctcaaacacacactttcaacacactccaataacatgttgatacatc---cccatcctttgtttaattaaccggcaacct 46905502  T
Q  187 aatatgaaattgaaatgtattaaaaat 213  Q
     ||||||||||||||||||||||||||    
T  46905503 gatatgaaattgaaatgtattaaaaat 46905529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 46906240 - 46906319
Alignment:
Q  207 taaaaattggggtgaggtggcttcctattattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    |||||| | ||||||||||||||||||||||||||||||||  ||||| |||||||||| ||||||||||||||||||||    
T  46906240 taaaaaattgggtgaggtggcttcctattattggagtgtgtaaaaagagtgtgtttgagggtttgtccttagcatttctc 46906319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 34630587 - 34630641
Alignment:
Q  85 aagagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataa 139  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34630587 aagagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 34630641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 34630735 - 34630786
Alignment:
Q  234 ttattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttct 285  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34630735 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 34630786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 22899519 - 22899569
Alignment:
Q  236 attggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22899519 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 22899569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 22899569 - 22899519
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaat 137  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22899569 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaat 22899519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 46905458 - 46905406
Alignment:
Q  234 ttattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  46905458 ttattggagtgtgttgaaagtgtgtgtttgagagtttatccttagcatttctc 46905406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 46906319 - 46906267
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataa 139  Q
    |||||||||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  46906319 gagaaatgctaaggacaaaccctcaaacacactctttttacacactccaataa 46906267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 1780356 - 1780320
Alignment:
Q  19 agggttttggcaccaatcataaaactgataagggaaa 55  Q
    |||||||||||||||||||| || |||||||||||||    
T  1780356 agggttttggcaccaatcatgaatctgataagggaaa 1780320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 178; Significance: 8e-96; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 90 - 286
Target Start/End: Complemental strand, 51268521 - 51268324
Alignment:
Q  90 aaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccggcaacctaat 189  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51268521 aaatgctaaggacaaactctcaaacacactctttcaacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccgacaacctaat 51268422  T
Q  190 atgaaattgaaatgtattaaaaa-ttggggtgaggtggcttcctattattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  51268421 atgaaattgaaatgtattaaaaatttggggtgaggtggcttcctattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 51268324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 51268324 - 51268376
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataa 139  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  51268324 gagaaatgctaaggacaaactctcaaacacactctttcaacacactccaataa 51268376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 51268472 - 51268521
Alignment:
Q  234 ttattggagtgtgttgaaagattgtgtttgagagtttgtccttagcattt 283  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51268472 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 51268521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 52724959 - 52724907
Alignment:
Q  16 catagggttttggcaccaatcataaaactgataagggaaagttgtaatttttg 68  Q
    ||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  52724959 catagggttttggcaccaatcatgaaactgataagagaaagatgtaaattttg 52724907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 298 - 455
Target Start/End: Complemental strand, 3266960 - 3266800
Alignment:
Q  298 cactagttaacattttcaaggat---acgtcaatgttaaaaaagagtatactaaatgagtatgtagctaacaatggatgaatatacattgaagactcgca 394  Q
    |||| |||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3266960 cactggttaacatttccaaggatgctacgtcaatgttaaaaaagagtatactaaatgagtatgtagctaacaatggatgaatatacattgaagactcgca 3266861  T
Q  395 gacataacccaagtcagtttcaaattccgacatgctttacaacattgattctagttctaga 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3266860 gacataacccaagtcagtttcaaattccgacatgctttacaacattgattctagttctaga 3266800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 3267032 - 3266961
Alignment:
Q  16 catagggttttggcaccaatcataaaactgataagggaaagttgtaatttttgttaactaatatcccggaag 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  3267032 catagggttttggcaccaatcataaaactgataagggaaagttgtaatttttgttaactaatgttccggaag 3266961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 18900674 - 18900620
Alignment:
Q  236 attggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctctatc 290  Q
    ||||||| ||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  18900674 attggagagtgttaaaagagtgtgtttgagagtgtgtccttagcatttctctatc 18900620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 18900623 - 18900680
Alignment:
Q  86 agagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatg 143  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||| ||||||| |||||    
T  18900623 agagaaatgctaaggacacactctcaaacacactcttttaacactctccaatgacatg 18900680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 31092853 - 31092902
Alignment:
Q  19 agggttttggcaccaatcataaaactgataagggaaagttgtaatttttg 68  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  31092853 agggttttggcaccaatcatgaaactgataagggaaagctgcaatttttg 31092902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 45627808 - 45627860
Alignment:
Q  85 aagagaaatgctaaagacaaactctcaaacacactctttcaacacactccaat 137  Q
    |||||||||||||  ||||||||| | |||||||||||| |||||||||||||    
T  45627808 aagagaaatgctagggacaaactccctaacacactcttttaacacactccaat 45627860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 45627860 - 45627809
Alignment:
Q  236 attggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctct 287  Q
    ||||||||||||| ||||| |||||| | |||||||||| ||||||||||||    
T  45627860 attggagtgtgttaaaagagtgtgttagggagtttgtccctagcatttctct 45627809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 44995642 - 44995694
Alignment:
Q  85 aagagaaatgctaaagacaaactctcaaacacactctttcaacacactccaat 137  Q
    ||||||||||| |  ||||||||||| |||| ||||||| |||||||||||||    
T  44995642 aagagaaatgccagggacaaactctctaacatactcttttaacacactccaat 44995694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 43405484 - 43405572
Alignment:
Q  125 aacacactccaataacatgttgacacatcatccccatcctttgtttaattaaccggcaacctaatatgaaattgaaatgtattaaaaat 213  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43405484 aacacactccaataacatgttgacacgtcatccccatcctttgtttaattaaccggcaacctgatatgaaattgaaatgtattaaaaat 43405572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 208 - 286
Target Start/End: Original strand, 43406290 - 43406368
Alignment:
Q  208 aaaaattggggtgaggtggcttcctattattggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttctc 286  Q
    |||||||| |||||||||||||||||||||||||||||||  ||||| |||||||||| |||| |||||||||||||||    
T  43406290 aaaaattgaggtgaggtggcttcctattattggagtgtgtcaaaagagtgtgtttgagggtttatccttagcatttctc 43406368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 27274971 - 27275023
Alignment:
Q  16 catagggttttggcaccaatcataaaactgataagggaaagttgtaatttttg 68  Q
    |||||||||| |||||||||||| |||||||||||||||| |||||| |||||    
T  27274971 catagggtttaggcaccaatcatgaaactgataagggaaaattgtaaattttg 27275023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 32515310 - 32515346
Alignment:
Q  19 agggttttggcaccaatcataaaactgataagggaaa 55  Q
    |||||||||||||||||||| ||||||||||||||||    
T  32515310 agggttttggcaccaatcatgaaactgataagggaaa 32515346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 43406368 - 43406316
Alignment:
Q  87 gagaaatgctaaagacaaactctcaaacacactctttcaacacactccaataa 139  Q
    |||||||||||| || |||| ||||||||||||||||  ||||||||||||||    
T  43406368 gagaaatgctaaggataaaccctcaaacacactcttttgacacactccaataa 43406316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 287
Target Start/End: Complemental strand, 43405489 - 43405458
Alignment:
Q  256 tgtgtttgagagtttgtccttagcatttctct 287  Q
    ||||||||||||||||||||||||||||||||    
T  43405489 tgtgtttgagagtttgtccttagcatttctct 43405458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Original strand, 12641366 - 12641423
Alignment:
Q  371 atgaatatacattgaagactcgcagacataacccaagtcagtttcaaattccgacatg 428  Q
    ||||||||| |||||| ||||||||| | || |||||| | |||||||||||||||||    
T  12641366 atgaatatatattgaacactcgcagaaagaatccaagtaaatttcaaattccgacatg 12641423  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 33438176 - 33438212
Alignment:
Q  19 agggttttggcaccaatcataaaactgataagggaaa 55  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  33438176 agggttttggcaccaatcatgaaactgataagagaaa 33438212  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 45970002 - 45970057
Alignment:
Q  88 agaaatgctaaagacaaactctcaaacacactctttcaacacactccaataacatg 143  Q
    ||||||||||| |||| ||||||||||||||||||| ||||| ||||||| |||||    
T  45970002 agaaatgctaaggacacactctcaaacacactcttttaacactctccaatgacatg 45970057  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 45970051 - 45970002
Alignment:
Q  236 attggagtgtgttgaaagattgtgtttgagagtttgtccttagcatttct 285  Q
    ||||||| ||||| ||||| ||||||||||||| ||||||||||||||||    
T  45970051 attggagagtgttaaaagagtgtgtttgagagtgtgtccttagcatttct 45970002  T

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