View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5880_high_7 (Length: 445)

Name: NF5880_high_7
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5880_high_7
NF5880_high_7
[»] chr5 (17 HSPs)
chr5 (1-429)||(10559596-10560024)
chr5 (36-154)||(7193739-7193857)
chr5 (47-155)||(19605224-19605332)
chr5 (34-117)||(10659481-10659564)
chr5 (88-160)||(9849598-9849670)
chr5 (35-151)||(10746393-10746509)
chr5 (34-125)||(10612441-10612532)
chr5 (278-358)||(19605039-19605119)
chr5 (34-136)||(10716365-10716467)
chr5 (30-151)||(10605479-10605600)
chr5 (35-96)||(10651619-10651680)
chr5 (34-134)||(10587856-10587956)
chr5 (30-108)||(10739830-10739908)
chr5 (30-108)||(10762245-10762323)
chr5 (34-123)||(9827349-9827438)
chr5 (34-123)||(9835718-9835807)
chr5 (39-99)||(10551537-10551597)
[»] chr6 (4 HSPs)
chr6 (34-117)||(12958788-12958871)
chr6 (34-117)||(12900283-12900366)
chr6 (38-117)||(12932993-12933072)
chr6 (40-117)||(12907906-12907983)
[»] chr2 (1 HSPs)
chr2 (34-117)||(17922813-17922896)


Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 10559596 - 10560024
Alignment:
Q  1 caagaggaatcttatttcattaatacataaatccttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatata 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  10559596 caagaagaatcttatttcattaatacataaatccttagtttcactctttaggattggacttgcatgttcggtggaatcgccaacacaaagaatgaatata 10559695  T
Q  101 ttggatgtcactagagaactaaacatgatcagaaaggtttttctcgctggtaagaaaatttgagattctatgtgtttgtttggctcctaacgaattaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10559696 ttggatgtcactagagaactaaacatgatcagaaaggtttttcttgctggtaagaaaatttgagattctatgtgtttgtttggctcctaacgaattaatt 10559795  T
Q  201 gcttacaaagttatattaaattttcatccatgttgctatgcatttcaaattcctaatctaatacatacaaagacgtaaatgaattttattttgaatttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10559796 gcttacaaagttatattaaattttcatccatgttgctatgcatttcaaattcctaatctaatacatacaaagacgtaaatgaattttattttgaatttca 10559895  T
Q  301 ggtgttcaccctcgtcagtaatcaaagctaaaataaatttctgcaataatttcagaaatagaagtttatgcaatatgatgcactgcaagtgaaactgttc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10559896 ggtgttcaccctcgtcagtaatcaaagctaaaataaatttctgcaataatttcagaaatagaagtttatgcaatatgatgcactgcaagtgaaactgttc 10559995  T
Q  401 actaaatttctctctagcctagccatttt 429  Q
    |||||||||||||||||||||||||||||    
T  10559996 actaaatttctctctagcctagccatttt 10560024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 36 - 154
Target Start/End: Original strand, 7193739 - 7193857
Alignment:
Q  36 tagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagagaactaaacatgatcagaaa 135  Q
    |||||||||| ||||||||||||||||| ||||| |||||||||||||||  ||||||||||||| |||||||||  |||||  ||| ||| |||| |||    
T  7193739 tagtttcactttttaggattggacttgcttgttcagtggaatcaccaaaagaaagaatgaatatagtggatgtcatcagagacttaagcataatcaaaaa 7193838  T
Q  136 ggtttttctcgctggtaag 154  Q
     | || |||||||||||||    
T  7193839 cgcttatctcgctggtaag 7193857  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 47 - 155
Target Start/End: Complemental strand, 19605332 - 19605224
Alignment:
Q  47 tttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagagaactaaacatgatcagaaaggtttttctcg 146  Q
    ||||||||||||||||| |||||| ||||||| || |||  |||||||||||||   |||| ||||||||| |||||||| |||||||||  |||||||     
T  19605332 tttaggattggacttgcctgttcgatggaatctcccaaagaaagaatgaatatagaagatgccactagagagctaaacataatcagaaagacttttctca 19605233  T
Q  147 ctggtaaga 155  Q
    |||||||||    
T  19605232 ctggtaaga 19605224  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 10659564 - 10659481
Alignment:
Q  34 cttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagaga 117  Q
    |||||||||||| ||| ||||||||||||||||||| ||| |||||||||||  ||||||||||||| | |||||||| |||||    
T  10659564 cttagtttcactttttcggattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagttgatgtcaccagaga 10659481  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 9849670 - 9849598
Alignment:
Q  88 aagaatgaatatattggatgtcactagagaactaaacatgatcagaaaggtttttctcgctggtaagaaaatt 160  Q
    ||||||||||| | |||||||||||||||| |||||||| ||||||||   ||||||| ||||||||||||||    
T  9849670 aagaatgaatacaatggatgtcactagagagctaaacataatcagaaacacttttctcactggtaagaaaatt 9849598  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 10746509 - 10746393
Alignment:
Q  35 ttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagagaactaaacatgatcagaa 134  Q
    ||||||||||| |||||||||||||||   ||| |  | ||||||||||||  |||||||||||   |||||||||||||||| || ||||| |||||||    
T  10746509 ttagtttcactttttaggattggacttatttgtacaattgaatcaccaaaagaaagaatgaatactgtggatgtcactagagagctcaacataatcagaa 10746410  T
Q  135 aggtttttctcgctggt 151  Q
    |||  ||||| ||||||    
T  10746409 aggcctttcttgctggt 10746393  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 10612441 - 10612532
Alignment:
Q  34 cttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagagaactaaaca 125  Q
    |||||||||||| |||||||||||||||   |||||  |||||||||| |||  ||||||||||||  ||||||| ||||||||||| ||||    
T  10612441 cttagtttcactttttaggattggacttctttgttcaatggaatcacccaaagaaagaatgaatattgtggatgttactagagaacttaaca 10612532  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 278 - 358
Target Start/End: Complemental strand, 19605119 - 19605039
Alignment:
Q  278 aatgaattttattttgaatttcaggtgttcaccctcgtcagtaatcaaagctaaaataaatttctgcaataatttcagaaa 358  Q
    ||||| |||| ||||||||||||||||||||||||| |||  |||||||||| ||||||| |||   |||||||| |||||    
T  19605119 aatgagttttgttttgaatttcaggtgttcaccctcatcacaaatcaaagctgaaataaacttccagaataatttgagaaa 19605039  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 10716467 - 10716365
Alignment:
Q  34 cttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagagaactaaacatgatcaga 133  Q
    ||||||||| || || |||||||||||||  ||| |  |||||||||| | |  ||||||||||||  |||||||||||||||| || ||||| ||||||    
T  10716467 cttagtttctcttttcaggattggacttgtttgtacaatggaatcaccgatagaaagaatgaatattatggatgtcactagagagctcaacataatcaga 10716368  T
Q  134 aag 136  Q
    |||    
T  10716367 aag 10716365  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 10605479 - 10605600
Alignment:
Q  30 aatccttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagagaactaaacatgat 129  Q
    |||||||||||||||| ||||| |||||||||   |||||  |||||||||| |||  ||||||||||||  ||||||| |||| ||| || ||||  ||    
T  10605479 aatccttagtttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttactaaagagcttaacacaat 10605578  T
Q  130 cagaaaggtttttctcgctggt 151  Q
    | | ||||  ||||||||||||    
T  10605579 ccggaaggcctttctcgctggt 10605600  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 10651680 - 10651619
Alignment:
Q  35 ttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaa 96  Q
    ||||||||||| || |||||||||||||| ||||| ||| |||||||||||  |||||||||    
T  10651680 ttagtttcacttttcaggattggacttgcttgttcagtgaaatcaccaaaagaaagaatgaa 10651619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 10587956 - 10587856
Alignment:
Q  34 cttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagagaactaaacatgatcaga 133  Q
    ||||||||||||  | |||||||||||||| |||||  ||||||||||||||  ||||||||  ||| | ||||| || ||||| ||||| || ||||||    
T  10587956 cttagtttcacttctaaggattggacttgcttgttcaatggaatcaccaaaagaaagaatgagcataatagatgttacaagagagctaaatataatcaga 10587857  T
Q  134 a 134  Q
    |    
T  10587856 a 10587856  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 10739908 - 10739830
Alignment:
Q  30 aatccttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgt 108  Q
    |||||||||||||||| ||||| |||||||||   |||||  |||||||||| |||  ||||||||||||  |||||||    
T  10739908 aatccttagtttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgt 10739830  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 10762323 - 10762245
Alignment:
Q  30 aatccttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgt 108  Q
    |||||||||||||||| ||||| |||||||||   |||||  |||||||||| |||  ||||||||||||  |||||||    
T  10762323 aatccttagtttcactttttagaattggacttatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgt 10762245  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 9827438 - 9827349
Alignment:
Q  34 cttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagagaactaaa 123  Q
    |||||||||| | || |||||||||||||| |||||    ||||||||||||  ||||||||| ||| | ||||| |||||||| |||||    
T  9827438 cttagtttcagttttaaggattggacttgcctgttcaagagaatcaccaaaagaaagaatgaacatagtagatgttactagagagctaaa 9827349  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 9835807 - 9835718
Alignment:
Q  34 cttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagagaactaaa 123  Q
    |||||||||| | || |||||||||||||| |||||    ||||||||||||  ||||||||| ||| | ||||| |||||||| |||||    
T  9835807 cttagtttcagttttaaggattggacttgcctgttcaagagaatcaccaaaagaaagaatgaacatagtagatgttactagagagctaaa 9835718  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 10551537 - 10551597
Alignment:
Q  39 tttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatat 99  Q
    |||||||  ||||||||| |||| | ||||| |||||||||||||||  ||||||||||||    
T  10551537 tttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatat 10551597  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 12958788 - 12958871
Alignment:
Q  34 cttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagaga 117  Q
    |||||||||||| |||||||||||||||  ||||||  ||||||||||||||  ||||||||||||  | ||||||||||||||    
T  12958788 cttagtttcactttttaggattggacttttatgttcattggaatcaccaaaagaaagaatgaatattgtcgatgtcactagaga 12958871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 117
Target Start/End: Original strand, 12900283 - 12900366
Alignment:
Q  34 cttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagaga 117  Q
    ||||||||||||  ||||||||| ||||  ||||||  ||||||||||||||  ||||||||||||  ||||||||||||||||    
T  12900283 cttagtttcacttcttaggattgcacttttatgttctttggaatcaccaaaagaaagaatgaatattgtggatgtcactagaga 12900366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 12932993 - 12933072
Alignment:
Q  38 gtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagaga 117  Q
    ||||||||  ||||||||| ||||  ||||||  ||||||||||||||  ||||||||||||  ||||||||||||||||    
T  12932993 gtttcacttcttaggattgcacttttatgttctttggaatcaccaaaagaaagaatgaatattgtggatgtcactagaga 12933072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 12907906 - 12907983
Alignment:
Q  40 ttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagaga 117  Q
    |||||| |||||||||||||||  ||||||  |||||||| |||||  ||||||||||||  | ||||||| ||||||    
T  12907906 ttcactttttaggattggacttttatgttcattggaatcaacaaaagaaagaatgaatattgtagatgtcaatagaga 12907983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 17922896 - 17922813
Alignment:
Q  34 cttagtttcactctttaggattggacttgcatgttcggtggaatcaccaaaacgaagaatgaatatattggatgtcactagaga 117  Q
    ||||||||| || |||||||||||||||   |||||  ||||||||||||||  ||||||||||||  ||||||||||||||||    
T  17922896 cttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaaagaatgaatattgtggatgtcactagaga 17922813  T

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