View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5880_high_9 (Length: 373)
Name: NF5880_high_9
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 358
Target Start/End: Complemental strand, 48769411 - 48769063
Alignment:
| Q |
10 |
tcgttcactgccaccgctaaagaatatttttgaaggttttccaattcgcaaacctttggttggctaagaccagaataaatgcttcatcctcctatttgtt |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48769411 |
tcgttctctgccaccgctaaagaatatttttgaaggttttccagttcgcaaacctttggttggctaagaccagaataaatgcttcatcctcctatttgtt |
48769312 |
T |
|
| Q |
110 |
gttatttttgaacctccatttattccatctaggagtaattgtttagtctattagtgtttctttgtttggcctgagaaattaactgcgtaagagttatttc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
48769311 |
gttatttttgaacctccatttattccatataggaataattgtttagtctattagtgtttctttgtttggcctgagaaattaaccgtgtaagagttatttc |
48769212 |
T |
|
| Q |
210 |
atattggttatgcctatatataaacttgtttataactcttttaggtcatggcggtgttcgtgctgctgagtatgttaagcaaaacttgtttagcaatttg |
309 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48769211 |
atattgtttatgcctatatataaacttgtttataactcttttaggtcatggcggtgttcgtgctgctgagtatgttaagcaaaacttgtttagcaatttg |
48769112 |
T |
|
| Q |
310 |
atcagtcacccaaaattcatttctgacaccaaatcagcaataagtatgt |
358 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48769111 |
atcagtcacccaaaattcatatctgacaccaaatcagcaataagtatgt |
48769063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 252 - 358
Target Start/End: Original strand, 3410448 - 3410554
Alignment:
| Q |
252 |
aggtcatggcggtgttcgtgctgctgagtatgttaagcaaaacttgtttagcaatttgatcagtcacccaaaattcatttctgacaccaaatcagcaata |
351 |
Q |
| |
|
||||||||| |||| ||| |||||||||||||| ||||||||| | ||||| ||||||||||| || |||||||||||||||||||||||||| |||||| |
|
|
| T |
3410448 |
aggtcatggtggtgctcgcgctgctgagtatgtcaagcaaaacctatttagtaatttgatcagccatccaaaattcatttctgacaccaaatctgcaata |
3410547 |
T |
|
| Q |
352 |
agtatgt |
358 |
Q |
| |
|
|||||| |
|
|
| T |
3410548 |
ggtatgt |
3410554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 252 - 358
Target Start/End: Complemental strand, 3436376 - 3436270
Alignment:
| Q |
252 |
aggtcatggcggtgttcgtgctgctgagtatgttaagcaaaacttgtttagcaatttgatcagtcacccaaaattcatttctgacaccaaatcagcaata |
351 |
Q |
| |
|
||||||||| |||| ||| |||||||||||||| ||||||||| | ||||| ||||||||||| || |||||||||||||||||||||||||| |||||| |
|
|
| T |
3436376 |
aggtcatggtggtgctcgcgctgctgagtatgtcaagcaaaacctatttagtaatttgatcagccatccaaaattcatttctgacaccaaatctgcaata |
3436277 |
T |
|
| Q |
352 |
agtatgt |
358 |
Q |
| |
|
|||||| |
|
|
| T |
3436276 |
ggtatgt |
3436270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University