View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5880_low_12 (Length: 322)
Name: NF5880_low_12
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 6 - 310
Target Start/End: Complemental strand, 34184368 - 34184064
Alignment:
| Q |
6 |
acagacacatcgggttgtggcagatatgttgcaggaccattagatttaggtggaaaacatgttcatggttgctccatcgaatagtcctgaactggaagtg |
105 |
Q |
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| T |
34184368 |
acagacacatcgggttgtggcagatatgttgcaggaccattagatttaggtggaaaacatgttcatggttgctccatcgaatagtcctgaactggaagtg |
34184269 |
T |
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| Q |
106 |
aaattcctactactgagccgcatgcgtatcctccagcgtaagacatgttgctcgactgcaaagtgcttccataaggaggaacttgtagcatgccagtgtg |
205 |
Q |
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| T |
34184268 |
aaattcctactactgagccgcatgcgtatcctccagcgtaagacatgttgctcgactgcaaagtgcatccataaggaggaacttgtagcatgccagtgtg |
34184169 |
T |
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| Q |
206 |
tcttactgcctcaagtggcctctatgccaaatgtattcgacatacttttaggttatcctagttataagcatcatccaccactgcgttctccctaatttta |
305 |
Q |
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| T |
34184168 |
tcttactgcctcaagtggcctctatgccaaatgtattcgacatacttttaggttatcctagttataagcatcatccaccactgcgttctccctaatttta |
34184069 |
T |
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| Q |
306 |
gcctt |
310 |
Q |
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||||| |
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| T |
34184068 |
gcctt |
34184064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 9430684 - 9430624
Alignment:
| Q |
130 |
cgtatcctccagcgtaagacatgttgctcgactgcaaagtgcttccataaggaggaacttg |
190 |
Q |
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| T |
9430684 |
cgtatcttcgagcgtaagacatgttgctcgcttgcatagtacttccataaggtggaacttg |
9430624 |
T |
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