View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5880_low_13 (Length: 322)
Name: NF5880_low_13
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880_low_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 19231811 - 19232125
Alignment:
| Q |
8 |
ataattctcacgcaaaccacacgcgcttcgcgtgtggttactgaacacgcttacgaccctcgctctcatgcatggcttcagattaagcaccaaccgttga |
107 |
Q |
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| T |
19231811 |
ataattctcacgcaaaccacacgcgcttcgcgagtggttaccgaacacgcttacgaccctcgctctcatgcatggcttcagattaagcaccaaccgttga |
19231910 |
T |
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| Q |
108 |
tcaccaaagctagtgaattccctaccgttagatcatctcattcgactcttctctacacgttgaccccatcggagtttactttttccattgatgcacttca |
207 |
Q |
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| T |
19231911 |
tcaccaaagctagtgaattccctaccgttagatcatctcattcgactcttctctacacgttgaccccatcggagttcactttttccattgatgcacttca |
19232010 |
T |
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| Q |
208 |
tcttaaatggcaccatgcaccttcaccgcgcgtgtggcgcacggacccaataataacgcgcgttggaaatcatgtagttgtcgctggtggtgcgtgtgag |
307 |
Q |
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| T |
19232011 |
tcttaaatggcaccatgcaccttcaccgcgcgtgtggcgcacggacccaataatagcgcgcgttggaaatcatgtagttgtcgctggtggtgcgtgtgag |
19232110 |
T |
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| Q |
308 |
ttcgaggatgatcct |
322 |
Q |
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| T |
19232111 |
ttcgaggatgatcct |
19232125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 56 - 321
Target Start/End: Complemental strand, 14630143 - 14629875
Alignment:
| Q |
56 |
gcttacgaccctcgctctcatgcatggcttcagat---taagcaccaaccgttgatcaccaaagctagtgaattccctaccgttagatcatctcattcga |
152 |
Q |
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| T |
14630143 |
gcttatgatcctcgctctcatgcgtggcttcagataactaaacaccaaccgttgatcaacaaaactcaggaaattccagccattagatcatctcattcaa |
14630044 |
T |
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| Q |
153 |
ctcttctctacacgttgaccccatcggagtttactttttccattgatgcacttcatcttaaatggcaccatgcaccttcaccgcgcgtgtggcgcacgga |
252 |
Q |
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| T |
14630043 |
ctctgctttacaccttatccccatcggagtttacgttttcactcgacgcacttcaactcgagtggcataaagcaccgtcaccgcgcgtgtggcgcactga |
14629944 |
T |
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| Q |
253 |
cccaataataacgcgcgttggaaatcatgtagttgtcgctggtggtgcgtgtgagttcgaggatgatcc |
321 |
Q |
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| T |
14629943 |
tccaatagtagcgcgcgttggaaattgtgtggtggttgctggcggcgcgtgtgagtttgaagatgatcc |
14629875 |
T |
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