View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5880_low_19 (Length: 304)
Name: NF5880_low_19
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880_low_19 |
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| [»] scaffold0279 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 27528360 - 27528078
Alignment:
| Q |
18 |
gtacaactcttttaaagtgatcgaattttatatattgcaatggattagatcccttaaaaaacatattagaccaccaagaattaaattaaaaataa----a |
113 |
Q |
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| T |
27528360 |
gtacaactctttcaaagtgattgaattttatatattgcaatggattagatcccataaaaaacatactagaccaccaagaattaaaataaaaaaaataaaa |
27528261 |
T |
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| Q |
114 |
aattaggtttatgagcattgagccacccnnnnnnnnnnnnnn-ttgacacgatcaaatatatgttccggtgacatttgattgttgcaaaaaatccaatga |
212 |
Q |
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| T |
27528260 |
aaataggtttatgagccttcagctaccaaaaaaaaataaaaaattgacacgatcaaatatatgttccggtgacatttgattgttgcaaaaaatccaatga |
27528161 |
T |
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| Q |
213 |
ttgcgcttcttccaaataattgtgcatcttctaaataacccatgcacacatcaaccaaatcatttgaactggtacacagaata |
295 |
Q |
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| T |
27528160 |
ttgcgcttcttccaaataattgtgcatcttctaaataacccatgtacacatcaaccaaatcatttgaactggtacacaaaata |
27528078 |
T |
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Back To:
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Target: scaffold0279 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: scaffold0279
Description:
Target: scaffold0279; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 22241 - 21959
Alignment:
| Q |
18 |
gtacaactcttttaaagtgatcgaattttatatattgcaatggattagatcccttaaaaaacatattagaccaccaagaattaaattaaaaataa----a |
113 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| || | |
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| T |
22241 |
gtacaactctttcaaagtgattgaattttatatattgcaatggattagatcccataaaaaacatactagaccaccaagaattaaaataaaaaaaataaaa |
22142 |
T |
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| Q |
114 |
aattaggtttatgagcattgagccacccnnnnnnnnnnnnnn-ttgacacgatcaaatatatgttccggtgacatttgattgttgcaaaaaatccaatga |
212 |
Q |
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| T |
22141 |
aaataggtttatgagccttcagctaccaaaaaaaaataaaaaattgacacgatcaaatatatgttccggtgacatttgattgttgcaaaaaatccaatga |
22042 |
T |
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| Q |
213 |
ttgcgcttcttccaaataattgtgcatcttctaaataacccatgcacacatcaaccaaatcatttgaactggtacacagaata |
295 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
22041 |
ttgcgcttcttccaaataatggtgcatcttctaaataacccatgtacacatcaaccaaatcatttgaactggtacacaaaata |
21959 |
T |
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