View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5880_low_21 (Length: 270)

Name: NF5880_low_21
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5880_low_21
NF5880_low_21
[»] chr3 (15 HSPs)
chr3 (1-249)||(8957066-8957314)
chr3 (1-194)||(8962506-8962699)
chr3 (1-196)||(8965221-8965416)
chr3 (1-234)||(8988290-8988526)
chr3 (56-198)||(9029113-9029255)
chr3 (57-198)||(9034621-9034762)
chr3 (56-191)||(9026154-9026289)
chr3 (59-198)||(8746957-8747096)
chr3 (56-198)||(9101228-9101370)
chr3 (58-198)||(9023452-9023592)
chr3 (64-177)||(9108802-9108915)
chr3 (58-177)||(9019290-9019409)
chr3 (55-198)||(8755580-8755723)
chr3 (61-191)||(9015428-9015558)
chr3 (63-177)||(9112114-9112228)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 8957066 - 8957314
Alignment:
Q  1 tcatcatcagctaccacaatgaagttgttcgtcgtttttgtcatcgtattcaccgccgtggcctcggcccaagaccttagtccgtcgttagctccagcac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8957066 tcatcatcagctaccacaatgaagttgttcgtcgtttttgtcatcgtattcaccaccgtggcctcggcccaagaccttagtccgtcgttagctccagcac 8957165  T
Q  101 ccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagcttcaattgtgctgtcaatggtcaccattttcaagaactaaga 200  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8957166 ccggtcctgacgctggagctgccggatttgttacaagttctgtggctatgatcggagcttcaattgtgctgtcaatggtcgccattttcaagaactaaga 8957265  T
Q  201 gaagtccattttgtgggaacactattaattatttatcagcacatatgat 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8957266 gaagtccattttgtgggaacactattaattatttatcagcacatatgat 8957314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 8962506 - 8962699
Alignment:
Q  1 tcatcatcagctaccacaatgaagttgttcgtcgtttttgtcatcgtattcaccgccgtggcctcggcccaagaccttagtccgtcgttagctccagcac 100  Q
    |||||||| ||||||||||||||||||||| | | |||||||||||| ||  |||| |||||||||||||||||||||||||| ||||||||||||||||    
T  8962506 tcatcatctgctaccacaatgaagttgttctttggttttgtcatcgtgtttgccgctgtggcctcggcccaagaccttagtccctcgttagctccagcac 8962605  T
Q  101 ccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagcttcaattgtgctgtcaatggtcaccattttcaagaa 194  Q
    | ||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||| || | || ||||||||    
T  8962606 caggtcctgatgctggagttgccggatctgttgcaggttctgtggctatgatcggagcttcaattgtgctttcaatgctcgctatcttcaagaa 8962699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 8965221 - 8965416
Alignment:
Q  1 tcatcatcagctaccacaatgaagttgttcgtcgtttttgtcatcgtattcaccgccgtggcctcggcccaagaccttagtccgtcgttagctccagcac 100  Q
    ||||||||| ||||||||||||| |||||| |||||||||||||||| ||  || | |||||||||||||||||||||||||||||||| ||||||||||    
T  8965221 tcatcatcaactaccacaatgaaattgttcttcgtttttgtcatcgtctttgccacagtggcctcggcccaagaccttagtccgtcgttggctccagcac 8965320  T
Q  101 ccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagcttcaattgtgctgtcaatggtcaccattttcaagaact 196  Q
    |  ||||||| ||||||| |||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| || | || ||||||||||    
T  8965321 caagtcctgacgctggagctgccggatctgttacaagttctatggcaatgatcggagcttcaattgtgctgtcaatgctcgcaatcttcaagaact 8965416  T

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Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 8988290 - 8988526
Alignment:
Q  1 tcatcatcagctaccacaatgaagttgttcgtcgtttttgtcatcgtattcaccgccgtggcctcggcccaagaccttagtccgtcgttagctccagcac 100  Q
    |||||||||||||||||||| ||||| ||| || ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||  |||||||||    
T  8988290 tcatcatcagctaccacaatcaagttcttcttcatttttgtcatcgtattcgccgccgtagcctcggcccaagaccttagtccctcgttgtctccagcac 8988389  T
Q  101 ccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagcttcaattgtgctgtcaatggtcaccattttcaagaactaaga 200  Q
    | |||||||| | ||||| |||| | | || |||||||| |||||||||||||||||||||||| || ||||||||| || | || |||||||||| |||    
T  8988390 caggtcctgacgttggagctgccagttctgctacaagttatgtggctatgatcggagcttcaatcgtactgtcaatgctcgctatcttcaagaactgaga 8988489  T
Q  201 gaagt---ccattttgtgggaacactattaattattt 234  Q
     || |   ||||||||| |||||||||||||||||||    
T  8988490 aaattgagccattttgttggaacactattaattattt 8988526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 9029113 - 9029255
Alignment:
Q  56 ccgtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcgg 155  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||| ||| |||| | |||||||||| | ||||||||||||    
T  9029113 ccgtggcctctgcccaagaccttagtccttcgttggctccagcaccaggtcctgatgctggagctgctggatctattacaagttcagcggctatgatcgg 9029212  T
Q  156 agcttcaattgtgctgtcaatggtcaccattttcaagaactaa 198  Q
    || |||||||||| |||||||| || |||| |||||| |||||    
T  9029213 agtttcaattgtgttgtcaatgctcgccatcttcaagcactaa 9029255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 198
Target Start/End: Original strand, 9034621 - 9034762
Alignment:
Q  57 cgtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcgga 156  Q
    ||||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||||| ||| |||| |||| ||||||| |||||||||||||||    
T  9034621 cgtggcctctgcccaagaccttagtccttcgttggctccggcaccaggtcctgatgctggagctgctggatctgttgcaagttcggtggctatgatcgga 9034720  T
Q  157 gcttcaattgtgctgtcaatggtcaccattttcaagaactaa 198  Q
    | |||||||||| |||||||| || |||| |||||| |||||    
T  9034721 gtttcaattgtgttgtcaatgctcgccatcttcaagcactaa 9034762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 191
Target Start/End: Original strand, 9026154 - 9026289
Alignment:
Q  56 ccgtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcgg 155  Q
    |||||||||| |||||||| |||||||| ||||| ||||||||||| ||| |||||||||||||||| |||| |||||||||||| ||||| ||||||||    
T  9026154 ccgtggcctctgcccaagatcttagtccttcgttggctccagcaccaggttctgatgctggagttgctggatctgttacaagttcagtggcaatgatcgg 9026253  T
Q  156 agcttcaattgtgctgtcaatggtcaccattttcaa 191  Q
    || |||| ||||  |||||||| || |||| |||||    
T  9026254 agtttcagttgtattgtcaatgatcgccatcttcaa 9026289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 198
Target Start/End: Original strand, 8746957 - 8747096
Alignment:
Q  59 tggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagc 158  Q
    ||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||| ||||| ||  |||| |||||||| ||| ||||||||||| ||||     
T  8746957 tggcctctgcccaagacctcagtccctcgttggctccagcaccaggtcctgatgttggagctgttggatctgttacaaattcagtggctatgattggagt 8747056  T
Q  159 ttcaattgtgctgtcaatggtcaccattttcaagaactaa 198  Q
    |||||||||| |||||||| || |||| |||||| |||||    
T  8747057 ttcaattgtgttgtcaatgctcgccatcttcaagcactaa 8747096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 198
Target Start/End: Original strand, 9101228 - 9101370
Alignment:
Q  56 ccgtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcgg 155  Q
    |||||||||| |||||| |||| ||||| ||||| ||||||||||| || ||||||||||||| ||| || | |||||||||||| ||||||||||||||    
T  9101228 ccgtggcctctgcccaaaacctcagtccctcgttggctccagcaccaggccctgatgctggagctgctggttctgttacaagttcagtggctatgatcgg 9101327  T
Q  156 agcttcaattgtgctgtcaatggtcaccattttcaagaactaa 198  Q
    || |||||||||  |||||||| || |||| || ||| |||||    
T  9101328 agtttcaattgtattgtcaatgctcgccatctttaagcactaa 9101370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 198
Target Start/End: Original strand, 9023452 - 9023592
Alignment:
Q  58 gtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggag 157  Q
    |||||||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||||| ||| |||| |||||||||||| ||||||||| |||||     
T  9023452 gtggcctctgcccaagaccttagtccctcgttggctccggcaccaggtcctgatgctggagctgctggatctgttacaagttcagtggctatggtcggaa 9023551  T
Q  158 cttcaattgtgctgtcaatggtcaccattttcaagaactaa 198  Q
     |||  ||||  |||||||| || |||| |||||| |||||    
T  9023552 tttcggttgtattgtcaatgctcgccatcttcaagcactaa 9023592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 177
Target Start/End: Original strand, 9108802 - 9108915
Alignment:
Q  64 tcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagcttcaa 163  Q
    ||||| |||||||| ||||| || || ||||||||| | ||||||||||  |||| |||||||| |||||||||||| ||||| ||||||||||||||||    
T  9108802 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaagttcagtggccatgatcggagcttcaa 9108901  T
Q  164 ttgtgctgtcaatg 177  Q
    ||||  ||||||||    
T  9108902 ttgtcttgtcaatg 9108915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 177
Target Start/End: Original strand, 9019290 - 9019409
Alignment:
Q  58 gtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggag 157  Q
    ||||||||||| |||||||||||||| || |  ||||| ||||| |||||||||| ||| | |   |||| |||||| ||||| || |||||||||||||    
T  9019290 gtggcctcggctcaagaccttagtccctcatccgctccggcaccaggtcctgatgttggggcttgtggatctgttacgagttcagttgctatgatcggag 9019389  T
Q  158 cttcaattgtgctgtcaatg 177  Q
    ||||||||||| ||||||||    
T  9019390 cttcaattgtgttgtcaatg 9019409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 198
Target Start/End: Original strand, 8755580 - 8755723
Alignment:
Q  55 gccgtggcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcg 154  Q
    |||||||| ||||| |||||||| ||||| ||||| ||||| ||||| | ||||||||| || | ||| |||| |||||||| ||| || |||||||| |    
T  8755580 gccgtggcttcggctcaagacctcagtccctcgttggctccggcaccagatcctgatgccggtgctgctggatctgttacaaattcagttgctatgattg 8755679  T
Q  155 gagcttcaattgtgctgtcaatggtcaccattttcaagaactaa 198  Q
    ||||||| ||| |  |||| ||| || |||| ||||||||||||    
T  8755680 gagcttcgattattttgtctatgctcgccatcttcaagaactaa 8755723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 191
Target Start/End: Original strand, 9015428 - 9015558
Alignment:
Q  61 gcctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagctt 160  Q
    |||||||| |||||||| || || |||||  |||| ||||| ||||||||||| ||||  || |||| |||||||| ||| ||| ||||| | |||| ||    
T  9015428 gcctcggctcaagacctcagcccctcgttgtctccggcaccaggtcctgatgccggagcagctggatatgttacaaattcagtgactatggttggagttt 9015527  T
Q  161 caattgtgctgtcaatggtcaccattttcaa 191  Q
    |||||||  |||||||| || |||| |||||    
T  9015528 caattgtattgtcaatgctcgccatcttcaa 9015558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 177
Target Start/End: Original strand, 9112114 - 9112228
Alignment:
Q  63 ctcggcccaagaccttagtccgtcgttagctccagcacccggtcctgatgctggagttgccggatttgttacaagttctgtggctatgatcggagcttca 162  Q
    ||||||||||||||| ||||| ||||| ||||| ||||| |  |||||| | |||| ||  |||| | |||||| | | ||||||||||| |||||||      
T  9112114 ctcggcccaagacctcagtccctcgttggctccggcaccagcacctgataccggagctgttggatctcttacaaatccagtggctatgatgggagctttg 9112213  T
Q  163 attgtgctgtcaatg 177  Q
    |||||| ||||||||    
T  9112214 attgtgttgtcaatg 9112228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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