View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5880_low_22 (Length: 256)
Name: NF5880_low_22
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880_low_22 |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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| [»] scaffold0689 (1 HSPs) |
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Alignment Details
Target: scaffold0055 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 1366 - 1196
Alignment:
| Q |
71 |
tataccatgatcctcaaccgatcttatctgagatctaaaatctcaagtttgtctatgaagagcgtatctaattatattagtgtttataatagannnnnnn |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
1366 |
tataccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgtatctaattatattagtgtctataatgga-tttttt |
1268 |
T |
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| Q |
171 |
nngtataatactaatcgatagcacctcattggtaagtgctacaagatctcgtacattagaatccagaattat |
242 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
1267 |
ttgtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgtacattagaacccagagttat |
1196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 83169 - 83339
Alignment:
| Q |
71 |
tataccatgatcctcaaccgatcttatctgagatctaaaatctcaagtttgtctatgaagagcgtatctaattatattagtgtttataatagannnnnnn |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
83169 |
tataccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgtatctaattatattagtgtctataatgga-tttttt |
83267 |
T |
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| Q |
171 |
nngtataatactaatcgatagcacctcattggtaagtgctacaagatctcgtacattagaatccagaattat |
242 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
83268 |
ttgtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgtacattagaacccagagttat |
83339 |
T |
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Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 18353357 - 18353187
Alignment:
| Q |
71 |
tataccatgatcctcaaccgatcttatctgagatctaaaatctcaagtttgtctatgaagagcgtatctaattatattagtgtttataatagannnnnnn |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| || |
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| T |
18353357 |
tataccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgtgtctaattatattagtgtctataatgga-tttttt |
18353259 |
T |
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| Q |
171 |
nngtataatactaatcgatagcacctcattggtaagtgctacaagatctcgtacattagaatccagaattat |
242 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
18353258 |
ttgtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgtacattagaacccagagttat |
18353187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 40977501 - 40977574
Alignment:
| Q |
76 |
catgatcctcaaccgatcttatctgagatctaaaatctcaagtttgtctatgaagagcgtatctaattatatta |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
40977501 |
catgatcctcaaccgatcttatctgagatctaaaatctcaagtttgtttatgaagagtctatctaattatatta |
40977574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 71 - 223
Target Start/End: Original strand, 13232268 - 13232419
Alignment:
| Q |
71 |
tataccatgatcctcaaccgatcttatctgagatctaaaatctcaagtttgtctatgaagagcgtatctaattatattagtgtttataatagannnnnnn |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| || |
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| T |
13232268 |
tataccatgatcctcaaccgatcttatctgagatctaaaatcccaagtttgtctatgaagagcgtgtctaattatattagtgtctataatgga-tttttt |
13232366 |
T |
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| Q |
171 |
nngtataatactaatcgatagcacctcattggtaagtgctacaagatctcgta |
223 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13232367 |
ttgtataatactaatcgatagcgcctcattggtaagtgctacaagatctcgta |
13232419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 227
Target Start/End: Complemental strand, 3740 - 3589
Alignment:
| Q |
75 |
ccatgatcctcaaccgatcttatctgagatctaaaatctcaagtttgtctatgaagagcgtatctaattatattagtgtttataatagannnnnnnnngt |
174 |
Q |
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|||||||||| ||||||||||| ||| |||| ||||| |||||||||||||||||||| |||||||| ||||||||| |||||| || || |
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| T |
3740 |
ccatgatcctgaaccgatcttacctgggatcgcaaatcccaagtttgtctatgaagagcagatctaattgtattagtgtctataattga-tttcttctgt |
3642 |
T |
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| Q |
175 |
ataatactaatcgatagcacctcattggtaagtgctacaagatctcgtacatt |
227 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
3641 |
gtaatactaatcgatagggcctcattggtaagtgctacaagatctcgtgcatt |
3589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 118 - 237
Target Start/End: Original strand, 7708247 - 7708365
Alignment:
| Q |
118 |
tttgtctatgaagagcgtatctaattatattagtgtttataatagannnnnnnnngtataatactaatcgatagcacctcattggtaagtgctacaagat |
217 |
Q |
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||||||||||||||||| ||||||||| || ||||| |||||| || ||||||||||||||| |||| |||| ||||||||||||||||||| |
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| T |
7708247 |
tttgtctatgaagagcggatctaattacatcagtgtctataatggatttttttt-gtataatactaatcgctagcgcctcgttggtaagtgctacaagat |
7708345 |
T |
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| Q |
218 |
ctcgtacattagaatccaga |
237 |
Q |
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|||||||||||||| ||||| |
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| T |
7708346 |
ctcgtacattagaacccaga |
7708365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 39337749 - 39337790
Alignment:
| Q |
71 |
tataccatgatcctcaaccgatcttatctgagatctaaaatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39337749 |
tataccatgatcctcaaccgatcttatctgagatctaaaatc |
39337790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 2916897 - 2916852
Alignment:
| Q |
197 |
cattggtaagtgctacaagatctcgtacattagaatccagaattat |
242 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
2916897 |
cattggtaagtgctacaagatctcgtacattagaacccagagttat |
2916852 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 14989669 - 14989611
Alignment:
| Q |
173 |
gtataatactaatcgatagcacctcattggtaagtgctacaagatctcgtacattagaa |
231 |
Q |
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||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
14989669 |
gtataatactaattgatagagcctcattggtaagtgctataagatctcgtacattagaa |
14989611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 2041032 - 2040964
Alignment:
| Q |
1 |
aattctctcatctcttagaggagttnnnnnnnncaaggcaatgtccctcttttctacaaaatctaagtat |
70 |
Q |
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| T |
2041032 |
aattctctcatctcttagaggagt-aaaaaaaacaaggcaatgtccctcttttctacaaaatctaagtat |
2040964 |
T |
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