View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5880_low_24 (Length: 250)

Name: NF5880_low_24
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5880_low_24
NF5880_low_24
[»] chr6 (1 HSPs)
chr6 (1-184)||(34704159-34704341)
[»] chr4 (1 HSPs)
chr4 (75-184)||(16036351-16036460)
[»] chr2 (1 HSPs)
chr2 (145-184)||(16965399-16965438)
[»] chr1 (1 HSPs)
chr1 (140-184)||(38506200-38506244)


Alignment Details
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 34704159 - 34704341
Alignment:
Q  1 tccacttagttgaaattcaaaatagcttattgttttgacttcttgaatttcggccttctaaaaaataaacgtgagatgcatgtattcttttgtgtgctat 100  Q
    ||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  34704159 tccacttagttgaaattcaag-tagcttattgttttgacttcctgaatttcggccttccaaacaataaacgtgagatgcatgtattcttttgtgtgctat 34704257  T
Q  101 ttaattcaacctttgccataccccatacattgtaaatcggctatccacttctccatgttgtttctgtttccaacacatctctta 184  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34704258 ttaactcaacctttgccataccccatacattgtaaatcggctatccacttctccatgttgtttctgtttccaacacatctctta 34704341  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 16036351 - 16036460
Alignment:
Q  75 gatgcatgtattcttttgtgtgctatttaattcaacctttgccataccccatacattgtaaatcggctatccacttctccatgttgtttctgtttccaac 174  Q
    |||||||||| || ||||  |||||||||||   |||||||||||||||||| ||   |||||  ||||||||||||||||| |||||||| ||||||||    
T  16036351 gatgcatgtactcatttggctgctatttaatcagacctttgccataccccatgcaaaataaattagctatccacttctccatattgtttctatttccaac 16036450  T
Q  175 acatctctta 184  Q
    ||||| ||||    
T  16036451 acatccctta 16036460  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 184
Target Start/End: Original strand, 16965399 - 16965438
Alignment:
Q  145 ccacttctccatgttgtttctgtttccaacacatctctta 184  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  16965399 ccacttctccatgttgtttctgtttccaacacatccctta 16965438  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 38506200 - 38506244
Alignment:
Q  140 gctatccacttctccatgttgtttctgtttccaacacatctctta 184  Q
    |||| |||||||||||| |||||||||||||||| ||||| ||||    
T  38506200 gctacccacttctccatattgtttctgtttccaatacatccctta 38506244  T

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