View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5880_low_3 (Length: 594)

Name: NF5880_low_3
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5880_low_3
NF5880_low_3
[»] chr5 (5 HSPs)
chr5 (463-585)||(39040708-39040834)
chr5 (18-146)||(39040078-39040206)
chr5 (385-468)||(39040456-39040539)
chr5 (205-289)||(39040265-39040349)
chr5 (282-326)||(39040355-39040399)
[»] chr2 (3 HSPs)
chr2 (18-146)||(2021764-2021894)
chr2 (282-326)||(2022042-2022086)
chr2 (207-289)||(2021954-2022034)
[»] chr4 (2 HSPs)
chr4 (207-326)||(23126895-23127016)
chr4 (18-146)||(23127076-23127204)
[»] chr1 (4 HSPs)
chr1 (207-289)||(47926246-47926328)
chr1 (18-78)||(47926459-47926519)
chr1 (18-70)||(50373038-50373089)
chr1 (292-326)||(47926196-47926230)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 9e-53; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 463 - 585
Target Start/End: Original strand, 39040708 - 39040834
Alignment:
Q  463 cattatcatctaaatccatc----agttttgcaaaccataattcaataagacgtttgtttgcatgatccaatagaaccgagaaattatgttgtgcaactg 558  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39040708 cattatcatctaaatccatcgatcagttttgcaaaccataattcaataagacgtttgtttgcatgatccaatagaaccgagaaattatgttgtgcaactg 39040807  T
Q  559 caactcatattatataaggctctctgc 585  Q
    || ||||||||||||||||||||||||    
T  39040808 cacctcatattatataaggctctctgc 39040834  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 39040078 - 39040206
Alignment:
Q  18 gttttaataaaagtaagtatattgttttctttcttatcaaaaagacacaacgtgttgcttgcatcaattgaatctttcatttccatgacnnnnnnnnttg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||        |||    
T  39040078 gttttaataaaagtaagtatattgttttctttcttatcaaaaagacacaacgtgttgcttgcgtcaactgaatctttcatttccatgacaaaaaaaattg 39040177  T
Q  118 aaagcatagctacttcactagataacttc 146  Q
    |||||||||||||||||||||||||||||    
T  39040178 aaagcatagctacttcactagataacttc 39040206  T

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Target: chr5; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 385 - 468
Target Start/End: Original strand, 39040456 - 39040539
Alignment:
Q  385 tcaccgggtttttaggtttagatacattaatgctttagtggttcctcaagtgtcacatgattattattttgatccactcattat 468  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39040456 tcaccggattattaggtttagatacattaatgctttagtggttcctcaagtgtcacatgattattattttgatccactcattat 39040539  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 39040265 - 39040349
Alignment:
Q  205 tatatttgttgcaattagcaagctttgtcctctctttcttcgctgcaaagcatagaaagctaaaatgtgattttttatctctcct 289  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  39040265 tatatttgttgcaattagcaagctttgtcctccctttcttcgctgcaaagctgagaaagctaaaaggtgattttttatctctcct 39040349  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 39040355 - 39040399
Alignment:
Q  282 tctctccttgacttctctcctccaccaaacaaaagaaaaacacta 326  Q
    |||||||||||||||||||||| | ||||||||||||||||||||    
T  39040355 tctctccttgacttctctcctctatcaaacaaaagaaaaacacta 39040399  T

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Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 2021764 - 2021894
Alignment:
Q  18 gttttaataaaagtaagtatattgttttctttcttatcaaaaagacacaacgtgttgcttgcatcaattgaatctttcatttccatgac--nnnnnnnnt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| | ||||||| |||||||||||          |    
T  2021764 gttttaataaaagtaagtatattgttttctttcttatcaaaaaaacacaacgtgctgcttgcgtcaactcaatcttttatttccatgacaaaaaaaaaat 2021863  T
Q  116 tgaaagcatagctacttcactagataacttc 146  Q
    |||||||||||||||||||||||||||||||    
T  2021864 tgaaagcatagctacttcactagataacttc 2021894  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 2022042 - 2022086
Alignment:
Q  282 tctctccttgacttctctcctccaccaaacaaaagaaaaacacta 326  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  2022042 tctctccttaacttctctcctccaccaaacaaaagaaaaacacta 2022086  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 2021954 - 2022034
Alignment:
Q  207 tatttgttgcaattagcaagctttgtcctctctttcttcgctgcaaagcatagaaagctaaaatgtgattttttatctctcct 289  Q
    |||||||||||||||||||||||||||||| |||||||| ||  ||||   ||||||| |||| ||| |||||||||||||||    
T  2021954 tatttgttgcaattagcaagctttgtcctccctttcttcactagaaag--gagaaagcaaaaaggtggttttttatctctcct 2022034  T

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Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 207 - 326
Target Start/End: Complemental strand, 23127016 - 23126895
Alignment:
Q  207 tatttgttgcaattagcaagctttgtcctctctttcttcgctgcaaagcatagaaagctaaaatgtgatttttt--atctctccttgacttctctcctcc 304  Q
    |||||| |||||||| ||||||||||||||  ||||||| |||||||||| ||||||| |||| || |||||||  |||||||||| |||||||||||||    
T  23127016 tatttgctgcaattaacaagctttgtcctcaatttcttcactgcaaagcagagaaagcaaaaaggtaattttttttatctctccttaacttctctcctcc 23126917  T
Q  305 accaaacaaaagaaaaacacta 326  Q
    ||||||||||||||||||||||    
T  23126916 accaaacaaaagaaaaacacta 23126895  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 23127204 - 23127076
Alignment:
Q  18 gttttaataaaagtaagtatattgttttctttcttatcaaaaagacacaacgtgttgcttgcatcaattgaatctttcatttccatgac-nnnnnnnntt 116  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||| ||||||| |||| | |||||||||||||||||||         ||    
T  23127204 gttttaataaa-gtaagtatattgttttctttcttattaaaaaaacacaatgtgctgcttgcgtcaactcaatctttcatttccatgacaaaaaaaaatt 23127106  T
Q  117 gaaagcatagctacttcactagataacttc 146  Q
    ||||||||||||||||||||||||||||||    
T  23127105 gaaagcatagctacttcactagataacttc 23127076  T

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Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 47926328 - 47926246
Alignment:
Q  207 tatttgttgcaattagcaagctttgtcctctctttcttcgctgcaaagcatagaaagctaaaatgtgattttttatctctcct 289  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||| || ||||||| ||||||||||||||||||||||||    
T  47926328 tatttgttgcaattagcaagctttgtcctccctttcttggctgcaaaacagagaaagcaaaaatgtgattttttatctctcct 47926246  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 47926519 - 47926459
Alignment:
Q  18 gttttaataaaagtaagtatattgttttctttcttatcaaaaagacacaacgtgttgcttg 78  Q
    ||||||||| |||||||||||||||||||||||||||  |||| |||||||||| ||||||    
T  47926519 gttttaatataagtaagtatattgttttctttcttatataaaaaacacaacgtggtgcttg 47926459  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 50373038 - 50373089
Alignment:
Q  18 gttttaataaaagtaagtatattgttttctttcttatcaaaaagacacaacgt 70  Q
    ||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||    
T  50373038 gttttaataaaagtaagtatattattttcttgcttattaaaaa-acacaacgt 50373089  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 326
Target Start/End: Complemental strand, 47926230 - 47926196
Alignment:
Q  292 acttctctcctccaccaaacaaaagaaaaacacta 326  Q
    ||||||||||||||||||||||| |||||||||||    
T  47926230 acttctctcctccaccaaacaaatgaaaaacacta 47926196  T

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