View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5880_low_30 (Length: 228)
Name: NF5880_low_30
Description: NF5880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5880_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 19232479 - 19232679
Alignment:
| Q |
7 |
gatgtcgaagaatatggtggagaagttgaagggtgattcagagtttggttcagttgaagtgatttgggttggtgattttgtttacttgcggaacacgtta |
106 |
Q |
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| T |
19232479 |
gatgccgaaggagatggtggagaagctgaagggtgattcagagtttggttcagttgaagtgatttgggttggggattttgtttacttgcggaacacgtta |
19232578 |
T |
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| Q |
107 |
gtattagaggagcttgttgtatgtgaggttatgaatggaagtttgtgtgagtggaggagtgtgaggaatgtggcggtggacggcggaacaaggatggtgt |
206 |
Q |
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| T |
19232579 |
gtactagaggagcttgttgtatgtgaggttatgaatggaagtttgtgtgagtggaggagtgtgaggaatgtggcggtggacggcggaacaaggatggtgt |
19232678 |
T |
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| Q |
207 |
t |
207 |
Q |
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| T |
19232679 |
t |
19232679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 14629517 - 14629317
Alignment:
| Q |
7 |
gatgtcgaagaatatggtggagaagttgaagggtgattcagagtttggttcagttgaagtgatttgggttggtgattttgtttacttgcggaacacgtta |
106 |
Q |
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| T |
14629517 |
gatgccgaaggagatggtggagaagttgagaggtgattcagagtttggttcagttgaagcaatttgggttgggaatttggtttacttgcgtaacacgttg |
14629418 |
T |
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| Q |
107 |
gtattagaggagcttgttgtatgtgaggttatgaatggaagtttgtgtgagtggaggagtgtgaggaatgtggcggtggacggcggaacaaggatggtgt |
206 |
Q |
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| T |
14629417 |
gtgttggatgaacttgttgtatgtgaggttgtaaatgggaacttgtgtgagtggagaagtgtgaagaatgcggcggtggacggtggaacgaggatggtgt |
14629318 |
T |
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| Q |
207 |
t |
207 |
Q |
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| T |
14629317 |
t |
14629317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 14619883 - 14620083
Alignment:
| Q |
7 |
gatgtcgaagaatatggtggagaagttgaagggtgattcagagtttggttcagttgaagtgatttgggttggtgattttgtttacttgcggaacacgtta |
106 |
Q |
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| T |
14619883 |
gatgccgaaggagatggtggagaagttgaagggtgattctgagtttggttcaattgaagcaatttgggttgggaatttggtttacttgcgtaacacgttg |
14619982 |
T |
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| Q |
107 |
gtattagaggagcttgttgtatgtgaggttatgaatggaagtttgtgtgagtggaggagtgtgaggaatgtggcggtggacggcggaacaaggatggtgt |
206 |
Q |
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| T |
14619983 |
gtgttagatgaacttgttgtatgtgaggttgtgaatgtgaaattgtgtgagtggaggagagtgaaaaatgcagcggtggatggcggaaccaggatggtgt |
14620082 |
T |
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| Q |
207 |
t |
207 |
Q |
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| T |
14620083 |
t |
14620083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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