View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5881-Insertion-2 (Length: 796)

Name: NF5881-Insertion-2
Description: NF5881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5881-Insertion-2
NF5881-Insertion-2
[»] chr1 (4 HSPs)
chr1 (508-752)||(4640706-4640951)
chr1 (14-68)||(32774127-32774181)
chr1 (570-620)||(11469509-11469559)
chr1 (419-484)||(11469362-11469427)
[»] chr4 (4 HSPs)
chr4 (418-542)||(22499527-22499651)
chr4 (568-635)||(22499720-22499786)
chr4 (9-82)||(16989632-16989705)
chr4 (570-620)||(6247214-6247264)
[»] chr6 (5 HSPs)
chr6 (418-542)||(34034539-34034663)
chr6 (568-635)||(34034404-34034470)
chr6 (14-82)||(1034330-1034399)
chr6 (9-82)||(18246532-18246605)
chr6 (9-75)||(2920929-2920995)
[»] chr5 (3 HSPs)
chr5 (570-708)||(4554907-4555045)
chr5 (9-68)||(36989055-36989114)
chr5 (23-68)||(40296118-40296163)
[»] chr3 (3 HSPs)
chr3 (9-93)||(53553625-53553709)
chr3 (9-82)||(1259279-1259352)
chr3 (9-82)||(37242567-37242640)
[»] chr2 (5 HSPs)
chr2 (9-70)||(11272556-11272617)
chr2 (9-76)||(33858646-33858713)
chr2 (673-719)||(41519719-41519765)
chr2 (11-68)||(13016050-13016107)
chr2 (14-47)||(1479466-1479499)
[»] chr8 (7 HSPs)
chr8 (14-82)||(9936427-9936495)
chr8 (419-518)||(12350318-12350417)
chr8 (9-56)||(8273862-8273909)
chr8 (570-620)||(12350221-12350271)
chr8 (9-48)||(36404084-36404123)
chr8 (9-48)||(37269863-37269902)
chr8 (9-48)||(42941266-42941305)
[»] chr7 (3 HSPs)
chr7 (14-82)||(42460087-42460155)
chr7 (9-69)||(31234744-31234804)
chr7 (20-63)||(21245198-21245241)
[»] scaffold0760 (1 HSPs)
scaffold0760 (9-48)||(1742-1781)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 508 - 752
Target Start/End: Complemental strand, 4640951 - 4640706
Alignment:
Q  508 tgaatggttttgtatcttgtgcaaagtagcagatcttcaattctgaatgaannnnnnnnatatgatgttatgtttttatttattcatgtttaactatttg 607  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||         |||||||||||| |||||||||||||||||||||||||||    
T  4640951 tgaatggttttgtatcttgtacaaagtagcagatcttcaattctgactgaattttttttctatgatgttatggttttatttattcatgtttaactatttg 4640852  T
Q  608 tcacttgtagagagaatcacaagtccatagaaattttgtcagtagagataagaggatttactacctcatacatggttctttgttttaattgtgaaatttt 707  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4640851 tcacttgtagagagaatcataagtccatagaaattttgtcagtagagacaagaggatttactacctcatacatggttctttgttttaattgtgaaatttt 4640752  T
Q  708 gtcattgaaatttcaatgacagtgataaggc-atgaattttggaaa 752  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  4640751 gtcattgaaatttcaatgacagtgataaggcaatggattttggaaa 4640706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 32774181 - 32774127
Alignment:
Q  14 ttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaa 68  Q
    |||||||| ||||||||||||||||||||||||||||||||||| || |||||||    
T  32774181 ttcctcttttatgagtggacttggaatcctagagagtgcctaaatagaagatgaa 32774127  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 620
Target Start/End: Original strand, 11469509 - 11469559
Alignment:
Q  570 tgatgttatgtttttatttattcatgtttaactatttgtcacttgtagaga 620  Q
    |||||||||||||| ||||||| |||||||| ||||||||| |||||||||    
T  11469509 tgatgttatgttttaatttatttatgtttaattatttgtcatttgtagaga 11469559  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 11469362 - 11469427
Alignment:
Q  419 cttggattgaatttaggtgtggtttttcagtttgggggaattggattcagggattagagagaagca 484  Q
    ||||||||| |||| ||||||||||||||||||| |||| |||  |||||| |||||| |||||||    
T  11469362 cttggattggatttgggtgtggtttttcagtttgagggatttgccttcaggaattagaaagaagca 11469427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 4e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 418 - 542
Target Start/End: Original strand, 22499527 - 22499651
Alignment:
Q  418 tcttggattgaatttaggtgtggtttttcagtttgggggaattggattcagggattagagagaagcagaagctcaatgaaaattttgtcatgaatggttt 517  Q
    ||||||||||||||| ||||||||||||||||||||||||||||  ||||| | ||| ||||||||| ||| |||||| || ||||  ||||||||||||    
T  22499527 tcttggattgaatttgggtgtggtttttcagtttgggggaattgtcttcagaggttaaagagaagcacaagttcaatggaatttttaacatgaatggttt 22499626  T
Q  518 tgtatcttgtgcaaagtagcagatc 542  Q
    | ||| |||| ||||||||||||||    
T  22499627 tttatgttgtacaaagtagcagatc 22499651  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 568 - 635
Target Start/End: Original strand, 22499720 - 22499786
Alignment:
Q  568 tatgatgttatgtttttatttattcatgtttaactatttgtcacttgtagagagaatcacaagtccat 635  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  22499720 tatgatgtta-gttttaatttattcatgtttaattatttgtcacttgtagagagaatcacatgtccat 22499786  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 16989632 - 16989705
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggctttt 82  Q
    ||||||||||||||||||||||||| ||||||||  |||| || ||||| || ||||||||| ||||| |||||    
T  16989632 cttctttcctcttctatgagtggacgtggaatccatgagaatgtctaaacagaagatgaacgcggctgtctttt 16989705  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 620
Target Start/End: Original strand, 6247214 - 6247264
Alignment:
Q  570 tgatgttatgtttttatttattcatgtttaactatttgtcacttgtagaga 620  Q
    |||||||||||||| ||||||| |||||||| ||||||||| |||||||||    
T  6247214 tgatgttatgttttaatttatttatgtttaattatttgtcatttgtagaga 6247264  T

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Target: chr6 (Bit Score: 61; Significance: 9e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 418 - 542
Target Start/End: Complemental strand, 34034663 - 34034539
Alignment:
Q  418 tcttggattgaatttaggtgtggtttttcagtttgggggaattggattcagggattagagagaagcagaagctcaatgaaaattttgtcatgaatggttt 517  Q
    |||||||||| |||| ||||||||||||||||||||||||||||  ||||| | ||| ||||||||| ||| |||||| || ||||  ||||||||||||    
T  34034663 tcttggattggatttgggtgtggtttttcagtttgggggaattgtcttcagaggttaaagagaagcacaagttcaatggaatttttaacatgaatggttt 34034564  T
Q  518 tgtatcttgtgcaaagtagcagatc 542  Q
    | ||| |||| ||||||||||||||    
T  34034563 tttatgttgtacaaagtagcagatc 34034539  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 568 - 635
Target Start/End: Complemental strand, 34034470 - 34034404
Alignment:
Q  568 tatgatgttatgtttttatttattcatgtttaactatttgtcacttgtagagagaatcacaagtccat 635  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  34034470 tatgatgtta-gttttaatttattcatgtttaattatttgtcacttgtagagagaatcacatgtccat 34034404  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 1034330 - 1034399
Alignment:
Q  14 ttcctcttctatgagtggacttggaatcctagagagtgcctaaa-aaggagatgaacggggctggctttt 82  Q
    |||||||| |||||||||||||||||||||| |||||||||||| | ||||||||| || |||| |||||    
T  1034330 ttcctcttttatgagtggacttggaatcctaaagagtgcctaaatagggagatgaaaggtgctgtctttt 1034399  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 18246605 - 18246532
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggctttt 82  Q
    ||||||||||||||||||||||||| ||||||||  |||| || ||||| || ||||||||| ||||| |||||    
T  18246605 cttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacgcggctgtctttt 18246532  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 2920995 - 2920929
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggct 75  Q
    ||||||||||||| ||||||||||| ||||||||  |||| || ||||| || ||||||||| ||||    
T  2920995 cttctttcctcttttatgagtggacatggaatccacgagaatgtctaaacagaagatgaacgtggct 2920929  T

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Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 570 - 708
Target Start/End: Complemental strand, 4555045 - 4554907
Alignment:
Q  570 tgatgttatgtttttatttattcatgtttaactatttgtcacttgtagagagaatcacaagtccatagaaattttgtcagtagagataagaggatttact 669  Q
    |||||||||||||| ||||||| |||||||| ||||||||| ||||||||| ||||||| | |||  |||||||||||  || ||| ||| | || ||||    
T  4555045 tgatgttatgttttaatttatttatgtttaattatttgtcatttgtagagaaaatcacatgcccaaggaaattttgtccctatagaaaagggtatctact 4554946  T
Q  670 acctcatacatggttctttgttttaattgtgaaattttg 708  Q
    |||||||||| |||||||  ||||||| |||||||||||    
T  4554945 acctcatacacggttcttcattttaatagtgaaattttg 4554907  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 36989055 - 36989114
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaa 68  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||||||||    
T  36989055 cttctttcctcttctataagtggacgtggaatcctagagagtgtctaacaaggagatgaa 36989114  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 40296163 - 40296118
Alignment:
Q  23 tatgagtggacttggaatcctagagagtgcctaaaaaggagatgaa 68  Q
    |||||||||||||||||||||| |||||| ||||| || |||||||    
T  40296163 tatgagtggacttggaatcctaaagagtgtctaaatagaagatgaa 40296118  T

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Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 53553709 - 53553625
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggcttttggatatgctat 93  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| || ||||  |||||||| ||||||    
T  53553709 cttctttcctcttttatgagtggacttggaatcctagagagtgcctaaataggagatgaaaggcgctgttttttggatctgctat 53553625  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 1259352 - 1259279
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggctttt 82  Q
    ||||||||||||||||||||||||| ||||||||  |||| || ||||| || ||||||||  ||||| |||||    
T  1259352 cttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggctgtctttt 1259279  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 37242640 - 37242567
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggctttt 82  Q
    ||||||||||||||||||||||||| ||||||||  |||| || ||||| || ||||||||  ||||| |||||    
T  37242640 cttctttcctcttctatgagtggacgtggaatccacgagaatgtctaaacagaagatgaacacggctgtctttt 37242567  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 11272556 - 11272617
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacg 70  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||| || |||||||||    
T  11272556 cttctttcctcttctatgagtgaacttggattcctagagagtgcccaaatagaagatgaacg 11272617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 33858713 - 33858646
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctg 76  Q
    |||| |||||||| ||||||||||||||||||||| |||| || ||||| || ||||||||| |||||    
T  33858713 cttccttcctcttatatgagtggacttggaatcctcgagaatgtctaaatagaagatgaacgtggctg 33858646  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 673 - 719
Target Start/End: Original strand, 41519719 - 41519765
Alignment:
Q  673 tcatacatggttctttgttttaattgtgaaattttgtcattgaaatt 719  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||    
T  41519719 tcatacatggttcttcattttaattgtgaaattttgccattgaaatt 41519765  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 13016107 - 13016050
Alignment:
Q  11 tctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaa 68  Q
    ||||| ||||| |||||||||||||||||||| ||||||||||| || || |||||||    
T  13016107 tcttttctcttttatgagtggacttggaatccgagagagtgccttaatagaagatgaa 13016050  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 1479499 - 1479466
Alignment:
Q  14 ttcctcttctatgagtggacttggaatcctagag 47  Q
    |||||||| |||||||||||||||||||||||||    
T  1479499 ttcctcttttatgagtggacttggaatcctagag 1479466  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 9936427 - 9936495
Alignment:
Q  14 ttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggctttt 82  Q
    |||||||| ||||||||||||||||| |||||| |||||||||| || ||||||| || ||||||||||    
T  9936427 ttcctcttttatgagtggacttggaaccctagacagtgcctaaatagaagatgaaaggtgctggctttt 9936495  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 419 - 518
Target Start/End: Complemental strand, 12350417 - 12350318
Alignment:
Q  419 cttggattgaatttaggtgtggtttttcagtttgggggaattggattcagggattagagagaagc-agaagctcaatgaaaattttgtcatgaatggttt 517  Q
    ||||||||| |||| ||||||||||||||||||| |||| |||  |||||| |||||| |||||| | || ||||||| || |||||| |||||||||||    
T  12350417 cttggattggatttgggtgtggtttttcagtttgtgggatttgccttcaggaattagaaagaagcaacaaactcaatggaatttttgt-atgaatggttt 12350319  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 8273862 - 8273909
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagagagtgcctaa 56  Q
    ||||||||||||| |||||||||| |||||||||||||||||| ||||    
T  8273862 cttctttcctcttttatgagtggatttggaatcctagagagtgtctaa 8273909  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 570 - 620
Target Start/End: Complemental strand, 12350271 - 12350221
Alignment:
Q  570 tgatgttatgtttttatttattcatgtttaactatttgtcacttgtagaga 620  Q
    |||||||||||||| ||||||| |||||||| ||||||||| |||||||||    
T  12350271 tgatgttatgttttaatttatttatgtttaattatttgtcatttgtagaga 12350221  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 36404123 - 36404084
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagaga 48  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  36404123 cttccttcctcttctacgagtggacttggaatcctagaga 36404084  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 37269902 - 37269863
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagaga 48  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  37269902 cttccttcctcttttatgagtggacttggaatcctagaga 37269863  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 42941266 - 42941305
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagaga 48  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  42941266 cttccttcctcttttatgagtggacttggaatcctagaga 42941305  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 42460155 - 42460087
Alignment:
Q  14 ttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaacggggctggctttt 82  Q
    |||||||| ||||||| ||||||||||||||||||||||||||| || ||||||| || |||| |||||    
T  42460155 ttcctcttttatgagtagacttggaatcctagagagtgcctaaatagaagatgaaaggtgctgcctttt 42460087  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 31234804 - 31234744
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagagagtgcctaaaaaggagatgaac 69  Q
    ||||||||||||||||||||||||||||||||||  |||| || ||||| || ||||||||    
T  31234804 cttctttcctcttctatgagtggacttggaatccacgagaatgtctaaacagaagatgaac 31234744  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 21245241 - 21245198
Alignment:
Q  20 ttctatgagtggacttggaatcctagagagtgcctaaaaaggag 63  Q
    |||||||||||| | ||||||||||||||||||||||| |||||    
T  21245241 ttctatgagtggtcgtggaatcctagagagtgcctaaagaggag 21245198  T

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Target: scaffold0760 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 1781 - 1742
Alignment:
Q  9 cttctttcctcttctatgagtggacttggaatcctagaga 48  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  1781 cttccttcctcttttatgagtggacttggaatcctagaga 1742  T

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