View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5881-Insertion-5 (Length: 426)
Name: NF5881-Insertion-5
Description: NF5881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5881-Insertion-5 |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 14810698 - 14810338
Alignment:
| Q |
13 |
ctgctgatagaatggcaatcttgcataatggagaccatttcctctgactaacttgaatagcttcttgaatagttgtaaaattgcatcgtagctttagaat |
112 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14810698 |
ctgctgatagaatggcaatcttgcaaaatggagaccatttcctctgactaacttgaatagcttcttgaatagttgtaaaattgcatcgtagctttagaat |
14810599 |
T |
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| Q |
113 |
tgagcttaaccattgccatattgatttagcaaaggtacagtccagcaataaatgagtggttgtttcttggtcttttctgcataagctacttaaggaagca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14810598 |
tgagcttaaccattgccatattgatttagcaaaggtacagtccagcaataaatgagtggttgtttcttggtcttttctgcataagctacttaaggaagca |
14810499 |
T |
|
| Q |
213 |
aacaatctcttgccgaaagatttttatctgtactgtgggtgtagcttattaacttattcattaatgtttttacggtatacatataatttaccgtacatat |
312 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14810498 |
aacaatctcgtgccgaaagatttttat-----ctgtgggtgtagcttattaacttattcattaatgtttttacggtatacatataatttaccgtacatat |
14810404 |
T |
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| Q |
313 |
tttaggaaatatacactataattgaaaagtgaaagaagtaagtcattagaaatgtataatatattt |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14810403 |
tttaggaaatatacactataattgaaaagtgaaagaagtaagtctgtagaaatgtataatatattt |
14810338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 402
Target Start/End: Complemental strand, 44073820 - 44073786
Alignment:
| Q |
368 |
ataatatatttaaggctaaaatatggttttagtcc |
402 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
44073820 |
ataatacatttaaggctaaaatatggttttagtcc |
44073786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 402
Target Start/End: Original strand, 33732855 - 33732883
Alignment:
| Q |
374 |
tatttaaggctaaaatatggttttagtcc |
402 |
Q |
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| T |
33732855 |
tatttaaggctaaaatatggttttagtcc |
33732883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 402
Target Start/End: Original strand, 19465641 - 19465672
Alignment:
| Q |
371 |
atatatttaaggctaaaatatggttttagtcc |
402 |
Q |
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| T |
19465641 |
atatatttaaggctaaaatatggttttagtcc |
19465672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 402
Target Start/End: Complemental strand, 5723 - 5687
Alignment:
| Q |
366 |
gtataatatatttaaggctaaaatatggttttagtcc |
402 |
Q |
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||||||| || |||||||||||||||||||||||||| |
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| T |
5723 |
gtataatttaattaaggctaaaatatggttttagtcc |
5687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 402
Target Start/End: Original strand, 40029134 - 40029162
Alignment:
| Q |
374 |
tatttaaggctaaaatatggttttagtcc |
402 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40029134 |
tatttaaggctaaaatatggttttagtcc |
40029162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 402
Target Start/End: Original strand, 4513256 - 4513284
Alignment:
| Q |
374 |
tatttaaggctaaaatatggttttagtcc |
402 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4513256 |
tatttaaggctaaaatatggttttagtcc |
4513284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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