View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5881-Insertion-9 (Length: 251)
Name: NF5881-Insertion-9
Description: NF5881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5881-Insertion-9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 35079808 - 35080051
Alignment:
| Q |
9 |
aaataaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgccatttcacttttgttaattataatgaactatagaacttactttatggt |
108 |
Q |
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| T |
35079808 |
aaataaagatcattgaaataacgagcaaaacggataaacaagctgaaggtgccatttctcttttgttaattataatgaactatagaacttactttatggt |
35079907 |
T |
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| Q |
109 |
tcttaatttataggcaaattttacatgt-atctcaaaaatgacggttttaaaaccgttctttttaacaaaagaatactaaagagtaaagacagttttttg |
207 |
Q |
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| T |
35079908 |
tcttaatttataggcaaattttacatgtcatctcaaaaatgacggttttaaaaccgttctttttaacaaaagaatactaaagagtaaagacagttttttg |
35080007 |
T |
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| Q |
208 |
cgtaaatcgagtcaagcaaatccaccagccattaatactctttg |
251 |
Q |
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| T |
35080008 |
cgtaaatcgagtcaagcaaatccaccagccattaatactctttg |
35080051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 35074836 - 35074911
Alignment:
| Q |
9 |
aaataaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgccatttcacttttgttaattataat |
84 |
Q |
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| T |
35074836 |
aaataaagatcattgaaataatgataaaaaaggataagtatgttgaaggtgccatttctattttgttaattataat |
35074911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 23922776 - 23922858
Alignment:
| Q |
13 |
aaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgcca-tttcacttttgttaattataatgaactataga |
94 |
Q |
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| T |
23922776 |
aaagatcattgaaatggtgagcaaaatggataaataggctgaagatgccattttctcttttgttaattataatggacaataga |
23922858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 23915123 - 23915179
Alignment:
| Q |
9 |
aaataaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgccattt |
65 |
Q |
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| T |
23915123 |
aaataaagatcattgaaatggtgagcaaaatggataaataggttgaagatgccattt |
23915179 |
T |
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