View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5881_high_6 (Length: 365)
Name: NF5881_high_6
Description: NF5881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5881_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 21404256 - 21404590
Alignment:
| Q |
19 |
actattgcaaccaccatatatctgtctagctatatatacaaagtaaaattggttttctcaaagtaaaattggttatggaattaactattggaaacaatgt |
118 |
Q |
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| T |
21404256 |
actattgcaaccaccatatatctgtctagctatatatacaaagtaaaattggttttctcaaagtaaaattggttatggaattaactattggaaacaatgt |
21404355 |
T |
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| Q |
119 |
atgtaattatgtagagcatgcaaatatgaattcactagtttcttggacatgatcaaattaatcatacccttgagttgtttctttggttcagctgaggcaa |
218 |
Q |
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| T |
21404356 |
atgtaattatgtagagcatgcaaatatgaattcactagtttcttggacatgatcaaattaatcatacccttgagttgtttctttggttcagctgaggcaa |
21404455 |
T |
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| Q |
219 |
tagtagttgtaaccttgacacaagatcattaatctgtttctctttcaactttgaatctcttgagtttctttggctagacatgactctcttttcttaattt |
318 |
Q |
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| T |
21404456 |
tagtagttgtaaccttgacacaagatcattaatctgtttctctttcaactttgaatctcttgagtttctttggctagacatgactctcttttcttaattt |
21404555 |
T |
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| Q |
319 |
tcttgtgcttacaatatttggcctttgataatatt |
353 |
Q |
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| T |
21404556 |
tcttgtgcttacaatatttggcctttgataatatt |
21404590 |
T |
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