View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5881_high_9 (Length: 288)
Name: NF5881_high_9
Description: NF5881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5881_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 4597914 - 4598173
Alignment:
| Q |
4 |
atggctctatttaacagatttcttagaggctaaattgcatctagcattatacaaactgttccaatctggttcattgacactgaagcacaacaaatactct |
103 |
Q |
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| T |
4597914 |
atggctctatttaactgaattctgagaggctaaattgtatatagcattatacaaactgttccaatctggttcattgacactgaagcacaacaaatattct |
4598013 |
T |
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| Q |
104 |
tcaagtgaaagaaaaactattacacagactaactcgcaaccaatacaaacaaaacaaaatgaaatatctaatactttcagagagaaaaagcatataccac |
203 |
Q |
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| T |
4598014 |
ttgactgaaagaaaaactattacacagactaactcacaatcaatacaaacaaaacaaaatgaaatatctaatactttaagagggaaaaagcatataccac |
4598113 |
T |
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| Q |
204 |
ttagagaatccttacagcaataaggaagaccaataccaaggtaatgtgctctatttacata |
264 |
Q |
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| T |
4598114 |
ttagagaatccttaaaacaa-aaggaagaccaataccaaggtaatgtactctatttacata |
4598173 |
T |
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