View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5881_low_1 (Length: 461)

Name: NF5881_low_1
Description: NF5881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5881_low_1
NF5881_low_1
[»] chr1 (17 HSPs)
chr1 (41-435)||(924236-924644)
chr1 (90-439)||(419542-419906)
chr1 (90-439)||(975255-975619)
chr1 (89-435)||(916185-916543)
chr1 (133-332)||(909818-910017)
chr1 (114-331)||(942492-942712)
chr1 (114-331)||(960453-960673)
chr1 (41-260)||(936646-936867)
chr1 (114-331)||(971762-971982)
chr1 (41-331)||(949481-949776)
chr1 (355-457)||(936431-936533)
chr1 (355-457)||(949340-949442)
chr1 (355-457)||(960312-960414)
chr1 (357-439)||(909699-909781)
chr1 (355-457)||(942351-942453)
chr1 (355-457)||(971621-971723)
chr1 (418-457)||(901967-902006)
[»] scaffold0312 (1 HSPs)
scaffold0312 (90-439)||(10665-11029)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 41 - 435
Target Start/End: Complemental strand, 924644 - 924236
Alignment:
Q  41 gaaacccaaacaacatgatcctgtgggacaaagtggcaaac---aacatgatccaggttgaactttgaatagtttgaaagcaaaatgtttgggattccat 137  Q
    |||| ||||||||||||| ||||||| |  |||||||||||   |||| | ||||||||||| ||||| || ||  ||||| |||||||| ||| |||||    
T  924644 gaaaaccaaacaacatgaccctgtggtaagaagtggcaaactggaaca-gttccaggttgaattttgagtacttgaaaagccaaatgtttaggactccat 924546  T
Q  138 tgtgatgtatcagtgtgacacacagcaatagctttaactgtgcttccatcagcaccttccaaaggcacagagtaaactttagttgcatctattttgtgac 237  Q
    ||||| ||||||| ||| || | ||||| |||||||||| || |||||||| ||||||||| ||||| | |||||||||||||||||  || ||||||||    
T  924545 tgtgaagtatcagagtggcaaatagcaacagctttaactttggttccatcaacaccttccataggcaaatagtaaactttagttgcacgtagtttgtgac 924446  T
Q  238 agtaaaaaactgcataagggtaattcagtttgtggcatgcaacaattttgttctcacccaatttcttaactccttttgctattatatattgttgtttatc 337  Q
    | ||||| |||| ||| || |||| || |   |||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  924445 aataaaacactgtatatggataatccattggatggcacacaacaattttgttctcacccaacttcttaactccttttgctattatatattgttgtatatc 924346  T
Q  338 actttctttgttta--tc----------acttcaacattgtttccaagtatagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttt 425  Q
    |||||||||||| |  ||           |||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  924345 actttctttgttcacttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgactctaatgatgttacacaactcttt 924246  T
Q  426 tgctctcctt 435  Q
    | ||||||||    
T  924245 tcctctcctt 924236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 90 - 439
Target Start/End: Original strand, 419542 - 419906
Alignment:
Q  90 ccaggttgaactttgaatagtttgaaagcaaaatgtttgggattccattgtgatgtatcagtgtgacacacagcaatagctttaactgtgcttccatcag 189  Q
    |||||||||||||||| || ||  || || |||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  419542 ccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcag 419641  T
Q  190 caccttccaaaggcacagagtaaactttagttgcatctattttgtgacagtaaaaaactgcataagggtaattcagtttgtggcatgcaacaattttg-- 287  Q
    |||| |||||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||  |||||| ||  |||||  ||||      
T  419642 caccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgtt 419741  T
Q  288 -ttctcacccaatttcttaactccttttgctattatatattgttgtttatcactttctttgtttatcact------------tcaacattgtttccaagt 374  Q
     ||||||||||| ||||| |||||   ||||||| |||||||||||  || |||||||||||| |   ||            |||||||| || ||||||    
T  419742 cttctcacccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagt 419841  T
Q  375 atagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttgctctcctttgat 439  Q
     |||||||||||||||||||||| || || |||||||||||||||  ||||| ||||||||||||    
T  419842 ttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgat 419906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 90 - 439
Target Start/End: Complemental strand, 975619 - 975255
Alignment:
Q  90 ccaggttgaactttgaatagtttgaaagcaaaatgtttgggattccattgtgatgtatcagtgtgacacacagcaatagctttaactgtgcttccatcag 189  Q
    |||||||||||||||| || ||  || || |||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  975619 ccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcag 975520  T
Q  190 caccttccaaaggcacagagtaaactttagttgcatctattttgtgacagtaaaaaactgcataagggtaattcagtttgtggcatgcaacaattttg-- 287  Q
    |||| |||||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||  |||||| ||  |||||  ||||      
T  975519 caccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgtt 975420  T
Q  288 -ttctcacccaatttcttaactccttttgctattatatattgttgtttatcactttctttgtttatcact------------tcaacattgtttccaagt 374  Q
     ||||||||||| ||||| |||||   ||||||| |||||||||||  || |||||||||||| |   ||            |||||||| || ||||||    
T  975419 cttctcacccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagt 975320  T
Q  375 atagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttgctctcctttgat 439  Q
     ||||||| |||||||||||||| || || |||||||||||||||  ||||| ||||||||||||    
T  975319 ttagaagtcgtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgat 975255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 89 - 435
Target Start/End: Complemental strand, 916543 - 916185
Alignment:
Q  89 tccaggttgaactttgaatagtttgaaagcaaaatgtttgggattccattgtgatgtatcagtgtgacacacagcaatagctttaactgtgcttccatca 188  Q
    |||||||||||| |||| ||  |  ||||| ||||| |||||| |||||||||| |||||| |||| || | ||||  || ||||||| || | ||||||    
T  916543 tccaggttgaaccttgagtacatgaaaagccaaatgcttgggactccattgtgaagtatcattgtggcaaatagcagcagttttaactttggtaccatca 916444  T
Q  189 gcaccttccaaaggcacagagtaaactttagttgcatctattttgtgacagtaaaaaactgcataagggtaattcagtttgtggcatgcaacaattttgt 288  Q
      |||||||| ||||| | ||||||||||||||||   || ||||||||| ||||| |||||||| || ||| |||||   |||||  ||||||||||||    
T  916443 ataccttccataggcaaatagtaaactttagttgcccgtaatttgtgacaataaaacactgcatatggataactcagtagatggcacacaacaattttgt 916344  T
Q  289 tctcacccaatttcttaactccttttgctattatatattgttgtttatcactttctttgtt-----------tatca-cttcaacattgtttccaagtat 376  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||            | || |||||||||||||||||||  |    
T  916343 tctcactcaacttcttaactccttttgctattatatattgttgtttatcactttctttgttcgcttctgttgaaacagcttcaacattgtttccaagctt 916244  T
Q  377 agaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttgctctcctt 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  916243 agaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttcctctcctt 916185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 133 - 332
Target Start/End: Complemental strand, 910017 - 909818
Alignment:
Q  133 tccattgtgatgtatcagtgtgacacacagcaatagctttaactgtgcttccatcagcaccttccaaaggcacagagtaaactttagttgcatctatttt 232  Q
    |||||||||| ||||||| ||| || | ||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  910017 tccattgtgaagtatcagagtggcaaatagcaacagctttaactctacttccatcagcaccttccaaaggcacagagtaaactttagttgcatctgtttt 909918  T
Q  233 gtgacagtaaaaaactgcataagggtaattcagtttgtggcatgcaacaattttgttctcacccaatttcttaactccttttgctattatatattgttgt 332  Q
    ||||||||||||||||||||||||||||||| ||||||||||  |||| |  |||||||| |||| |||||| ||||| |||||||||| ||||||||||    
T  909917 gtgacagtaaaaaactgcataagggtaattccgtttgtggcacacaaccaaattgttctctcccattttcttcactccgtttgctattacatattgttgt 909818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 114 - 331
Target Start/End: Complemental strand, 942712 - 942492
Alignment:
Q  114 aaagcaaaatgtttgggattccattgtgatgtatcagtgtgacacacagcaatagctttaactgtgcttccatcagcaccttccaaaggcacagagtaaa 213  Q
    ||||| |||||||| |||||||||| |||||||||||||||||| |||||||||| ||||||  || |||||||| |||||||||| |||||||||||||    
T  942712 aaagccaaatgtttaggattccattctgatgtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaa 942613  T
Q  214 ctttagttgcatctattttgtgacagtaaaaaactgcataagggtaattcagtttgtggcatgcaacaattttg---ttctcacccaatttcttaactcc 310  Q
    ||| ||||| |||  |||| ||||||||||||||||||||||||||||||  |||||| ||  ||| | |||||   ||||||||||||||||| |||||    
T  942612 cttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttcttcactcc 942513  T
Q  311 ttttgctattatatattgttg 331  Q
    ||||||||||| |||||||||    
T  942512 ttttgctattacatattgttg 942492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 114 - 331
Target Start/End: Complemental strand, 960673 - 960453
Alignment:
Q  114 aaagcaaaatgtttgggattccattgtgatgtatcagtgtgacacacagcaatagctttaactgtgcttccatcagcaccttccaaaggcacagagtaaa 213  Q
    ||||| |||||||| |||||||||| |||||||||||||||||| |||||||||| ||||||  || |||||||| |||||||||| |||||||||||||    
T  960673 aaagccaaatgtttaggattccattctgatgtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaa 960574  T
Q  214 ctttagttgcatctattttgtgacagtaaaaaactgcataagggtaattcagtttgtggcatgcaacaattttg---ttctcacccaatttcttaactcc 310  Q
    ||| ||||| |||  |||| ||||||||||||||||||||||||||||||  |||||| ||  ||| | |||||   ||||||||||||||||| |||||    
T  960573 cttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttcttcactcc 960474  T
Q  311 ttttgctattatatattgttg 331  Q
    ||||||||||| |||||||||    
T  960473 ttttgctattacatattgttg 960453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 41 - 260
Target Start/End: Complemental strand, 936867 - 936646
Alignment:
Q  41 gaaacccaaacaacatgatcctgtgggacaaagtggcaaac---aacatgatccaggttgaactttgaatagtttgaaagcaaaatgtttgggattccat 137  Q
    ||||||||||||||||||||||| || |  ||||| |||||   |||| | |||||||||||| ||||  | ||  ||||| |||||||| |||||||||    
T  936867 gaaacccaaacaacatgatcctgaggaaggaagtgacaaactggaaca-gttccaggttgaacattgagcacttgaaaagccaaatgtttaggattccat 936769  T
Q  138 tgtgatgtatcagtgtgacacacagcaatagctttaactgtgcttccatcagcaccttccaaaggcacagagtaaactttagttgcatctattttgtgac 237  Q
    ||||| |||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |||  |||| ||||    
T  936768 tgtgaagtatcagtgtgacacacagcaacagctttaactctacttccatcaacaccttccaaaggcacagagtaaactttagttgaatcagttttatgac 936669  T
Q  238 agtaaaaaactgcataagggtaa 260  Q
    |||||||||||||||||||||||    
T  936668 agtaaaaaactgcataagggtaa 936646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 114 - 331
Target Start/End: Complemental strand, 971982 - 971762
Alignment:
Q  114 aaagcaaaatgtttgggattccattgtgatgtatcagtgtgacacacagcaatagctttaactgtgcttccatcagcaccttccaaaggcacagagtaaa 213  Q
    ||||| |||||||| |||||||||| |||||||||||||||||| |||||||||| ||||||  || |||||||| |||||||||| |||||||||||||    
T  971982 aaagccaaatgtttaggattccattctgatgtatcagtgtgacaaacagcaatagttttaaccatgtttccatcaacaccttccaatggcacagagtaaa 971883  T
Q  214 ctttagttgcatctattttgtgacagtaaaaaactgcataagggtaattcagtttgtggcatgcaacaattttg---ttctcacccaatttcttaactcc 310  Q
    ||| ||||| |||  |||| ||||||||||||||||||||||||||||||  |||||| ||  ||| | |||||   |||||||||||||| || |||||    
T  971882 cttcagttgaatcagttttatgacagtaaaaaactgcataagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttattcactcc 971783  T
Q  311 ttttgctattatatattgttg 331  Q
    ||||||||| | |||||||||    
T  971782 ttttgctataacatattgttg 971762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 41 - 331
Target Start/End: Complemental strand, 949776 - 949481
Alignment:
Q  41 gaaacccaaacaacatgatcctgtgggacaaagtggcaaaca---acatgatccaggttgaactttgaatagtttgaaagcaaaatgtttgggattccat 137  Q
    ||||||||||||||||||||||||||||  | ||| |||| |   ||| |  || |||||||||||||  | ||  ||||| |||||||| || ||||||    
T  949776 gaaacccaaacaacatgatcctgtgggaggatgtgacaaataggaaca-gtccctggttgaactttgagcacttgaaaagccaaatgtttagggttccat 949678  T
Q  138 tgtgatgtatcagtgtgacacacagcaatagctttaactgtgcttccatcagcaccttccaaaggcacagagtaaactttagttgcatctattttgtgac 237  Q
    | |||||||||||||||||| ||| |||||| ||||||  || |||||||| |||||||||| ||||||||||||||||  |||| |||  |||| ||||    
T  949677 tctgatgtatcagtgtgacaaacaacaatagttttaaccatgtttccatcaacaccttccaagggcacagagtaaacttcggttgaatcagttttatgac 949578  T
Q  238 agtaaaaaactgcataagggtaattcagtttgtggcatgcaacaattttg---ttctcacccaatttcttaactccttttgctattatatattgttg 331  Q
    ||||||||||||  ||||||||||||  |||||| ||  ||| | |||||   |||||||||||||| || |||||||||||||| | |||||||||    
T  949577 agtaaaaaactgtgtaagggtaattctctttgtgacacacaatagttttgttcttctcacccaatttattcactccttttgctataacatattgttg 949481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 355 - 457
Target Start/End: Complemental strand, 936533 - 936431
Alignment:
Q  355 cttcaacattgtttccaagtatagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttgctctcctttgatgtcattttcttctca 454  Q
    |||| ||||||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||  ||||| ||||||||||||| |||||||||| ||    
T  936533 cttcgacattgtttccaagtttcgaagtagtgaaatcaaccatagattccaatgatgttacacaaagcttttcctctcctttgatgccattttcttcaca 936434  T
Q  455 ctc 457  Q
    |||    
T  936433 ctc 936431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 457
Target Start/End: Complemental strand, 949442 - 949340
Alignment:
Q  355 cttcaacattgtttccaagtatagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttgctctcctttgatgtcattttcttctca 454  Q
    |||||||||||||||| ||| | ||| |||||||||||||||| ||||| ||||| |||||||||  ||||| ||| ||||||||| ||||| |||| ||    
T  949442 cttcaacattgtttccgagttttgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcaca 949343  T
Q  455 ctc 457  Q
    |||    
T  949342 ctc 949340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 457
Target Start/End: Complemental strand, 960414 - 960312
Alignment:
Q  355 cttcaacattgtttccaagtatagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttgctctcctttgatgtcattttcttctca 454  Q
    |||||||||||||||| ||| | ||| |||||||||||||||| ||||| ||||| |||||||||  ||||| ||| ||||||||| ||||| |||| ||    
T  960414 cttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttgatgccatttgcttcaca 960315  T
Q  455 ctc 457  Q
    |||    
T  960314 ctc 960312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 439
Target Start/End: Complemental strand, 909781 - 909699
Alignment:
Q  357 tcaacattgtttccaagtatagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttgctctcctttgat 439  Q
    |||||||||||||||||  |  ||||||||||||||| ||| ||||| |||||||| ||||||  ||||| ||||||||||||    
T  909781 tcaacattgtttccaagcttcaaagtagtgaaatcaatcatagattccaatgatgtcacacaaagcttttcctctcctttgat 909699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 457
Target Start/End: Complemental strand, 942453 - 942351
Alignment:
Q  355 cttcaacattgtttccaagtatagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttgctctcctttgatgtcattttcttctca 454  Q
    |||||||||||||||| ||| | ||| | |||||||||||||| ||||| ||||| |||| ||||  ||||| ||| ||||||||| ||||| |||| ||    
T  942453 cttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttgatgccatttgcttcaca 942354  T
Q  455 ctc 457  Q
    |||    
T  942353 ctc 942351  T

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Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 457
Target Start/End: Complemental strand, 971723 - 971621
Alignment:
Q  355 cttcaacattgtttccaagtatagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttgctctcctttgatgtcattttcttctca 454  Q
    |||||||||||||||| ||| | ||| | |||||||||||||| ||||| ||||| |||| ||||  ||||| ||| ||||||||| ||||| |||| ||    
T  971723 cttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttgatgccatttgcttcaca 971624  T
Q  455 ctc 457  Q
    |||    
T  971623 ctc 971621  T

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Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 418 - 457
Target Start/End: Complemental strand, 902006 - 901967
Alignment:
Q  418 aactcttttgctctcctttgatgtcattttcttctcactc 457  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  902006 aactcttttgctctcctttgatgtcattttcttcacactc 901967  T

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Target: scaffold0312 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 90 - 439
Target Start/End: Complemental strand, 11029 - 10665
Alignment:
Q  90 ccaggttgaactttgaatagtttgaaagcaaaatgtttgggattccattgtgatgtatcagtgtgacacacagcaatagctttaactgtgcttccatcag 189  Q
    |||||||||||||||| || ||  || || |||||||| || ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  11029 ccaggttgaactttgagtacttgaaatgccaaatgttttgggttccattctgatgtatcagtgtgacacacagcaatagctttaactctgcttccatcag 10930  T
Q  190 caccttccaaaggcacagagtaaactttagttgcatctattttgtgacagtaaaaaactgcataagggtaattcagtttgtggcatgcaacaattttg-- 287  Q
    |||| |||||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||  |||||| ||  |||||  ||||      
T  10929 caccctccaaaggcacagagtaagctttagttgtatctgttttgtgacagtaaaacactgcataagggtaattctctttgtgacacacaacagctttgtt 10830  T
Q  288 -ttctcacccaatttcttaactccttttgctattatatattgttgtttatcactttctttgtttatcact------------tcaacattgtttccaagt 374  Q
     ||||||||||| ||||| |||||   ||||||| |||||||||||  || |||||||||||| |   ||            |||||||| || ||||||    
T  10829 cttctcacccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagt 10730  T
Q  375 atagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttgctctcctttgat 439  Q
     |||||||||||||||||||||| || || |||||||||||||||  ||||| ||||||||||||    
T  10729 ttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttgat 10665  T

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