View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5881_low_10 (Length: 281)
Name: NF5881_low_10
Description: NF5881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5881_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 35079808 - 35080054
Alignment:
| Q |
18 |
aaataaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgccatttcacttttgttaattataatgaactatagaacttactttatggt |
117 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35079808 |
aaataaagatcattgaaataacgagcaaaacggataaacaagctgaaggtgccatttctcttttgttaattataatgaactatagaacttactttatggt |
35079907 |
T |
|
| Q |
118 |
tcttaatttataggcaaattttacatgt-atctcaaaaatgacggttttaaaaccgttctttttaacaaaagaatactaaagagtaaagacagttttttg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35079908 |
tcttaatttataggcaaattttacatgtcatctcaaaaatgacggttttaaaaccgttctttttaacaaaagaatactaaagagtaaagacagttttttg |
35080007 |
T |
|
| Q |
217 |
cgtaaatcgagtcaagcaaatccaccagccattaatactctttgttc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35080008 |
cgtaaatcgagtcaagcaaatccaccagccattaatactctttgttc |
35080054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 35074836 - 35074911
Alignment:
| Q |
18 |
aaataaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgccatttcacttttgttaattataat |
93 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||| | | ||||||||||||||| |||||||||||||||| |
|
|
| T |
35074836 |
aaataaagatcattgaaataatgataaaaaaggataagtatgttgaaggtgccatttctattttgttaattataat |
35074911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 23922776 - 23922858
Alignment:
| Q |
22 |
aaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgcca-tttcacttttgttaattataatgaactataga |
103 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||| | ||||||| ||||| |||| |||||||||||||||||| || ||||| |
|
|
| T |
23922776 |
aaagatcattgaaatggtgagcaaaatggataaataggctgaagatgccattttctcttttgttaattataatggacaataga |
23922858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 23915123 - 23915179
Alignment:
| Q |
18 |
aaataaagatcattgaaatagcgagcaaaacggataaacaagctgaaggtgccattt |
74 |
Q |
| |
|
||||||||||||||||||| | |||||||| ||||||| | | ||||| |||||||| |
|
|
| T |
23915123 |
aaataaagatcattgaaatggtgagcaaaatggataaataggttgaagatgccattt |
23915179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University