View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5881_low_11 (Length: 253)
Name: NF5881_low_11
Description: NF5881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5881_low_11 |
 | |
|
| [»] scaffold0648 (2 HSPs) |
| | |
|
| [»] scaffold0640 (2 HSPs) |
| | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 17942617 - 17942393
Alignment:
| Q |
11 |
agcagagaggtgtgttagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17942617 |
agcagagaggtgtgttagaacttcaccagacagcctattactccataggttcaagacttccagttctgacaagttcttccaactatgtggaattgatcct |
17942518 |
T |
|
| Q |
111 |
gagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaat |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17942517 |
gagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaattattgtgatccaacaataaagtggaacaat |
17942418 |
T |
|
| Q |
211 |
ttagtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
17942417 |
ttagtgtaaggttggatatgtcttc |
17942393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 19393795 - 19393588
Alignment:
| Q |
28 |
gaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
127 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19393795 |
gaacttcaccagacagcttattactccataggttcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttataaga |
19393696 |
T |
|
| Q |
128 |
caaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagat |
227 |
Q |
| |
|
|||||||| | || | |||||| |||||||| |||||||||||||||||| |||||||||||||| ||||| | |||||||||| || ||||||||| |
|
|
| T |
19393695 |
caaatcaacccaatctgccattggagatatgtttgggagtcctcctgtgaaattattgtgatccaaccataaaaagaaacaatttagagttaggttagat |
19393596 |
T |
|
| Q |
228 |
atgtcttc |
235 |
Q |
| |
|
|||||||| |
|
|
| T |
19393595 |
atgtcttc |
19393588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 17726876 - 17727098
Alignment:
| Q |
13 |
cagagaggtgtgttagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctga |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| || | || | | |||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
17726876 |
cagagaggtgtcctagaacttcaccagacagcctattactccataggtttaggagtcctagttctctcaagttcttccaactatctggaattgatcctga |
17726975 |
T |
|
| Q |
113 |
gaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaattt |
212 |
Q |
| |
|
|||||| |||||||||||||||| | | | ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||| || |
|
|
| T |
17726976 |
gaaggaattgtaagacaaatcaactgttaaagccattggtgataggtttgggagtcctcctgtgaaattattgtgatccaacaataagtaggaacaaatt |
17727075 |
T |
|
| Q |
213 |
agtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
17727076 |
agtgttaggttagatatgtcttc |
17727098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 19028105 - 19028327
Alignment:
| Q |
13 |
cagagaggtgtgttagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctga |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| || | || | | |||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
19028105 |
cagagaggtgtcctagaacttcaccagacagcctattactccataggtttaggagtcctagttctctcaagttcttccaactatctggaattgatcctga |
19028204 |
T |
|
| Q |
113 |
gaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaattt |
212 |
Q |
| |
|
|||||| |||||||||||||||| | | | ||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||| || |
|
|
| T |
19028205 |
gaaggaattgtaagacaaatcaactgttaaagccattggtgataggtttgggagtcctcctgtgaaattattgtgatccaacaataagtaggaacaaatt |
19028304 |
T |
|
| Q |
213 |
agtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
19028305 |
agtgttaggttagatatgtcttc |
19028327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 237
Target Start/End: Complemental strand, 19414830 - 19414621
Alignment:
| Q |
28 |
gaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
127 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19414830 |
gaacttcaccagatagcctattactccacaggttcaagactgtcagttctttcaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
19414731 |
T |
|
| Q |
128 |
caaatcaattctattggac-attggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttaga |
226 |
Q |
| |
|
|||||||| | | ||| |||||||||||||| || ||||| ||||||||||||||||||||||| ||||| | ||||||||| ||||| |||||||| |
|
|
| T |
19414730 |
caaatcaa-caaactcgacaattggtgatatgtttggaagtccacctgtgaaactattgtgatccaaaaataatgcggaacaattcagtgttaggttaga |
19414632 |
T |
|
| Q |
227 |
tatgtcttctg |
237 |
Q |
| |
|
||||||||||| |
|
|
| T |
19414631 |
tatgtcttctg |
19414621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 19381556 - 19381375
Alignment:
| Q |
11 |
agcagagaggtgtgttagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcct |
110 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19381556 |
agcagagaggtgtgctagaacttcaccagacagcctattactccacagtttcaagacttcaagttctgacaagttcttccaactatgcggaattgatcct |
19381457 |
T |
|
| Q |
111 |
gagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatcca |
192 |
Q |
| |
|
||||||||||||||||||||||||| | || | ||||||||||||| |||||||| | ||||||| |||||||||||| |
|
|
| T |
19381456 |
gagaaggagttgtaagacaaatcaacaaactcggccgttggtgatatgtttgggagtccacttgtgaaattattgtgatcca |
19381375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 17950493 - 17950271
Alignment:
| Q |
13 |
cagagaggtgtgttagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctga |
112 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| | || | | | | ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17950493 |
cagagaggtgtcctagaacttcaccagatagcctattactccaaaggttaatgtaatgtaattctgacaagttctttaaactatgtggaattgatcctga |
17950394 |
T |
|
| Q |
113 |
gaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaattt |
212 |
Q |
| |
|
||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| || ||||||| |
|
|
| T |
17950393 |
gaaggagttgtaagaaaaatcaactctataggacattggtgatatgttcgggagtcctcctgtgaaattattgtgatgcaaatataactcggtacaattt |
17950294 |
T |
|
| Q |
213 |
agtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
|||| ||||||| ||||||||| |
|
|
| T |
17950293 |
agtgataggttagttatgtcttc |
17950271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 19376285 - 19376103
Alignment:
| Q |
11 |
agcagagaggtgtgttagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcct |
110 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19376285 |
agcagagaggtgagctagaacttcaccagatagcctattactccataggttcaactctttcaattctgacaagttcttccaactatgtggaattgatcca |
19376186 |
T |
|
| Q |
111 |
gagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaa |
193 |
Q |
| |
|
|||||||||||| |||||| |||| ||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||| |
|
|
| T |
19376185 |
gagaaggagttgaaagacacgtcaacatgattggtcattggtgatatgtttgggagtccacctgtgaaattattgtgatccaa |
19376103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 19437593 - 19437397
Alignment:
| Q |
39 |
gacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattc |
138 |
Q |
| |
|
|||| |||||||||||| | |||| |||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
19437593 |
gacaacctattactccacaggttcatgactctcagttctttcaagttcttccaactatgcggaattgatcctgagaaggagttgtaagacaaatcaacta |
19437494 |
T |
|
| Q |
139 |
tattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
| | || ||| |||||||||| |||||||||||| |||| ||||||||||||| ||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
19437493 |
tttgggcaattagtgatatgtttgggagtcctcctacgaaattattgtgatccaagaataagatggaacaatttagtgttaggttagatatgtcttc |
19437397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 81 - 232
Target Start/End: Complemental strand, 19464949 - 19464798
Alignment:
| Q |
81 |
aagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaac |
180 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||| | ||||||||||||||| ||||||||||| |||||| |
|
|
| T |
19464949 |
aagttcttccaactatatggaattgttcctgagaaggagttgtaagacaaatcaactctaaaagccattggtgatatgtttgggagtcctccagtgaaat |
19464850 |
T |
|
| Q |
181 |
tattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtc |
232 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||||| |||||||||||||| |
|
|
| T |
19464849 |
tattgtgatccaagaataatgaggaacaatttagtgttaggttagatatgtc |
19464798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 18109100 - 18108878
Alignment:
| Q |
13 |
cagagaggtgtgttagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctga |
112 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||| | || | | | | || ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18109100 |
cagagaggtgtcctagaacttcaccagatagcctattactccaaaggttaatgtaatgtaattatgacaagttcttccaactatgatgaattgatcctga |
18109001 |
T |
|
| Q |
113 |
gaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaattt |
212 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||| |||| ||| |||| || ||||||| |
|
|
| T |
18109000 |
gaaggagttgtaagaaaaatcaactctataggacattggtgatatgttcgagagtcctcctgtgaaattattatgatgcaaatataactcggtacaattt |
18108901 |
T |
|
| Q |
213 |
agtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
|||| ||||||||||||||||| |
|
|
| T |
18108900 |
agtgataggttagatatgtcttc |
18108878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 18144835 - 18144629
Alignment:
| Q |
29 |
aacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagac |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| | ||||||| ||||||||||||||||| ||||||||||||| |||| || ||||||||| |
|
|
| T |
18144835 |
aacttcaccagacagcctattactccatagattcaagaatgtcagttctttcaagttcttccaactatatggaattgatcctcagaatgaattgtaagac |
18144736 |
T |
|
| Q |
129 |
aaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagata |
228 |
Q |
| |
|
||||||| || || |||||| |||||||| || ||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||| |
|
|
| T |
18144735 |
aaatcaacataataggccattggcgatatgtttggtagtcctcctgtgaaattattgtgatccaaccttatgtacgaacaatttagtgttaggttagata |
18144636 |
T |
|
| Q |
229 |
tgtcttc |
235 |
Q |
| |
|
||||||| |
|
|
| T |
18144635 |
tgtcttc |
18144629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 19334655 - 19334448
Alignment:
| Q |
28 |
gaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| || | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19334655 |
gaacttcaccagacagcctattactccataggttcaggagtgatagttctttcaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
19334556 |
T |
|
| Q |
128 |
caaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagat |
227 |
Q |
| |
|
|||||||| | || ||||||||||| ||| |||||||||| || |||| |||||| ||||||| |||| ||||||||||||| ||||| ||| |
|
|
| T |
19334555 |
caaatcaactacccaggccattggtgataagtttgggagtcctcttgcgaaattattgttatccaaccataagaacaaacaatttagtgttaggttggat |
19334456 |
T |
|
| Q |
228 |
atgtcttc |
235 |
Q |
| |
|
|||||||| |
|
|
| T |
19334455 |
atgtcttc |
19334448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 19400387 - 19400165
Alignment:
| Q |
13 |
cagagaggtgtgttagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctga |
112 |
Q |
| |
|
||||||||||| ||| |||||||||| |||||||||| ||| | || | |||| ||| ||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
19400387 |
cagagaggtgtcccagagcttcaccagatagcctattacgccacaggttgatgactcccacttcattcaagttcttccaactatgcggaattgatcctga |
19400288 |
T |
|
| Q |
113 |
gaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaattt |
212 |
Q |
| |
|
||| |||||||||||||||||| || | ||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| | |||||||| |
|
|
| T |
19400287 |
gaaaaagttgtaagacaaatcaacatgatagaccattggtgatatgtttgggagtcttcctgtgaaactattgtgatccaaccttaaaattaaacaattt |
19400188 |
T |
|
| Q |
213 |
agtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
19400187 |
agtgttaggttagatatgtcttc |
19400165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 80 - 235
Target Start/End: Complemental strand, 19425281 - 19425126
Alignment:
| Q |
80 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaa |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | || | ||||| | |||||||||||||||||||||||||| |
|
|
| T |
19425281 |
caagttcttccaactatgtggaattgatcccgagaatgagttgtaagacaaatcaactgcataagccattgttaatatgttcgggagtcctcctgtgaaa |
19425182 |
T |
|
| Q |
180 |
ctattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||||| ||||| ||||||||||| |
|
|
| T |
19425181 |
ttattgttatccaatcctaaattggaacaatttagtgttaggttggatatgtcttc |
19425126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 235
Target Start/End: Complemental strand, 18165746 - 18165595
Alignment:
| Q |
84 |
ttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactat |
183 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
18165746 |
ttcttccaactatgtggaattgttcctgagaaggagttgaaagacaaatcaacaaaattggccattggtgatatgtttgggagtcctcctgtgaaattat |
18165647 |
T |
|
| Q |
184 |
tgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
18165646 |
tgtgatccaaacgtaagtcaaaacaatttagtgttaggttagatatgtcttc |
18165595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 18873232 - 18873445
Alignment:
| Q |
28 |
gaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
127 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18873232 |
gaacttcaccagatagcctattactccacaggttcaagactatcagttctttcaagttcttccaactatgtggaattgatcctgagaaggaattgtaaga |
18873331 |
T |
|
| Q |
128 |
caaatcaattctattggacattggtga------tatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaagg |
221 |
Q |
| |
|
|||||||||| | || |||| ||| |||||| |||||||||||||||||| |||||||||| || ||| | ||||||||||||| | | |
|
|
| T |
18873332 |
caaatcaattattttctcaattgctgatccaactatgtttgggagtcctcctgtgaaattattgtgatctaaacttaagcagaaacaatttagtgttatg |
18873431 |
T |
|
| Q |
222 |
ttagatatgtcttc |
235 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18873432 |
ttagatatgtcttc |
18873445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 192
Target Start/End: Complemental strand, 18103981 - 18103828
Alignment:
| Q |
39 |
gacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattc |
138 |
Q |
| |
|
|||| |||||||||||| | ||||| |||| ||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
18103981 |
gacaacctattactccacagattcatgactctcagttctttcatgttcttccaactatgaggaattgttcctgagaaggagttgtaagacaaatcgattt |
18103882 |
T |
|
| Q |
139 |
tattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatcca |
192 |
Q |
| |
|
| || ||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
18103881 |
caaaggccattggtgatatgtttgggagtcctcctgtgaaattattgtgatcca |
18103828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 237
Target Start/End: Complemental strand, 18147424 - 18147267
Alignment:
| Q |
80 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaa |
179 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||| |||||||||| | || |||||||||||||| || ||||| ||||||||| |
|
|
| T |
18147424 |
caagttcttccaagtatgcggaattgatcctgagaaggagttgtaggacaaatcaacaaactcggcaattggtgatatgtttggaagtccacctgtgaaa |
18147325 |
T |
|
| Q |
180 |
ctattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttctg |
237 |
Q |
| |
|
||||||| |||||| ||||| | ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
18147324 |
ctattgttatccaaaaataatgaggaacaattcagtgttaggttagatatgtcttctg |
18147267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 235
Target Start/End: Original strand, 14895791 - 14895951
Alignment:
| Q |
75 |
tctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctg |
174 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||| | |||| ||||| | ||| ||||||||||||||| ||||||||||||| |
|
|
| T |
14895791 |
tctgtcaagttcttccaactatgtggaatttctcctgagaaggagttgaatgacacatcaacatgagtggtcattggtgatatgtttgggagtcctcctg |
14895890 |
T |
|
| Q |
175 |
tgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
||||| | |||||||||||| |||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
14895891 |
tgaaattgttgtgatccaaccttaaaaacaaacaatttagtgttaggttagatatgtcttc |
14895951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 18116559 - 18116447
Alignment:
| Q |
80 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaa |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | || ||||||| |||||||||||||||||| |
|
|
| T |
18116559 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattccataggcaaatgacaatatgtttgggagtcctcctgtgaaa |
18116460 |
T |
|
| Q |
180 |
ctattgtgatcca |
192 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18116459 |
ttattgtgatcca |
18116447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 80 - 235
Target Start/End: Complemental strand, 16677804 - 16677649
Alignment:
| Q |
80 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaa |
179 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| |
|
|
| T |
16677804 |
caagttcttccaactatgtggaattattcccgagaaggagttgtaagacaaatcaactactcgggcaattggtgatatgttcgggagtcctcctgtgaaa |
16677705 |
T |
|
| Q |
180 |
ctattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
|||| ||||||||| ||| |||||||||| ||| ||||||||||||||||| |
|
|
| T |
16677704 |
ttattatgatccaaccctaaccatgaacaatttaatgttaggttagatatgtcttc |
16677649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 18016660 - 18016461
Alignment:
| Q |
36 |
ccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaa |
135 |
Q |
| |
|
||||||||| ||||| |||| | |||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
18016660 |
ccagacagcttattattccacaggttcatgactctcagttctgacaagttcttccaactatgtggaattgatcttgagaaggagttgtaagataaatcaa |
18016561 |
T |
|
| Q |
136 |
ttctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
| | | ||||||||| ||| |||||||||||||||||| |||| ||||||||| ||| |||||||| ||||| ||||||||||| ||||| |
|
|
| T |
18016560 |
caatcgcaggctttggtgataggtttgggagtcctcctgtgaaattattatgatccaaccttaacaccgaacaattaagtgttaggttagatatatcttc |
18016461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 19351995 - 19351872
Alignment:
| Q |
71 |
cagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcct |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| | | | | | |||||||| ||| ||||||||| |
|
|
| T |
19351995 |
cagttctgacaagttcttccaactatgtggaattgatcttgagaaggagttgtaagataaatcaactatctcagcctctggtgataggtttgggagtcct |
19351896 |
T |
|
| Q |
171 |
cctgtgaaactattgtgatccaac |
194 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
19351895 |
cctgtgaaattattgtgatccaac |
19351872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 233
Target Start/End: Complemental strand, 25463644 - 25463491
Alignment:
| Q |
80 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaa |
179 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | | | || |||||||||||| || || ||||||| ||||||| |
|
|
| T |
25463644 |
caagttcttccaaccatgtggaattgatcctgagaaggagttgtaagacatgtcaactatttgggccattggtgatatatttggaagtcctcttgtgaaa |
25463545 |
T |
|
| Q |
180 |
ctattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtct |
233 |
Q |
| |
|
||||| |||||||| ||| |||||||||||||| ||||||||||||||| |
|
|
| T |
25463544 |
ttattgcgatccaactctaaccatgaacaatttagtgttaggttagatatgtct |
25463491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 19461781 - 19461721
Alignment:
| Q |
80 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattcta |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19461781 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaagtcta |
19461721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 133
Target Start/End: Complemental strand, 19354361 - 19354256
Alignment:
| Q |
28 |
gaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
127 |
Q |
| |
|
|||| |||||||||| | |||||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19354361 |
gaacatcaccagacaacttattactccataggttcaagtttatcagttctttgcagttcttccaactatgtggaattgatcctgagaaggagttgtaaga |
19354262 |
T |
|
| Q |
128 |
caaatc |
133 |
Q |
| |
|
|||||| |
|
|
| T |
19354261 |
caaatc |
19354256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 19439239 - 19439184
Alignment:
| Q |
80 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaa |
135 |
Q |
| |
|
||||||| ||||| ||| ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
19439239 |
caagttcctccaattatatggaattgatcttgagacggagttgtaagacaaatcaa |
19439184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 235
Target Start/End: Original strand, 3504 - 3665
Alignment:
| Q |
74 |
ttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcct |
173 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| ||||||||| ||||||||||| |
|
|
| T |
3504 |
ttctaacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaactattaaggccattgatgatatgtttgggagtcctccc |
3603 |
T |
|
| Q |
174 |
gtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
||||| |||||||||||||| || | | ||||||||||||| ||||||||||||||||| |
|
|
| T |
3604 |
ttgaaattattgtgatccaaccttagaaagaaacaatttagtgttaggttagatatgtcttc |
3665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 3443 - 3485
Alignment:
| Q |
13 |
cagagaggtgtgttagaacttcaccagacagcctattactcca |
55 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
3443 |
cagagaggtgtcctagaacttcaccagacagcttattactcca |
3485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 6003 - 5842
Alignment:
| Q |
74 |
ttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcct |
173 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| ||||||||| ||||||||||| |
|
|
| T |
6003 |
ttctaacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaactattaaggccattgatgatatgtttgggagtcctccc |
5904 |
T |
|
| Q |
174 |
gtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
||||| |||||||||||||| || | | ||||||||||||| ||||||||||||||||| |
|
|
| T |
5903 |
ttgaaattattgtgatccaaccttagaaagaaacaatttagtgttaggttagatatgtcttc |
5842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 6064 - 6022
Alignment:
| Q |
13 |
cagagaggtgtgttagaacttcaccagacagcctattactcca |
55 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
6064 |
cagagaggtgtcctagaacttcaccagacagcttattactcca |
6022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 235
Target Start/End: Original strand, 2973 - 3134
Alignment:
| Q |
74 |
ttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcct |
173 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||| ||||||||| ||||||||||| |
|
|
| T |
2973 |
ttctaacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaactattaaggccattgatgatatgtttgggagtcctccc |
3072 |
T |
|
| Q |
174 |
gtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
||||| |||||||||||||| || | | ||||||||||||| ||||||||||||||||| |
|
|
| T |
3073 |
ttgaaattattgtgatccaaccttagaaagaaacaatttagtgttaggttagatatgtcttc |
3134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 2912 - 2954
Alignment:
| Q |
13 |
cagagaggtgtgttagaacttcaccagacagcctattactcca |
55 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
2912 |
cagagaggtgtcctagaacttcaccagacagcttattactcca |
2954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 235
Target Start/End: Original strand, 13666346 - 13666511
Alignment:
| Q |
70 |
ccagttctgacaagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcc |
169 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| || || ||||||||||||||| |||||||| |
|
|
| T |
13666346 |
ccagttctttcaagttcatccaactgtgtggaattgatcctgagaaagagttgtaagacaaatcaattatagcggccattggtgatatgtttgggagtcc |
13666445 |
T |
|
| Q |
170 |
tcctgtgaaactattgtgatccaacaataaagtggaacaatttagtgtaaggttagatatgtcttc |
235 |
Q |
| |
|
||||||||| |||||||||||||| ||| | ||||||| | ||| | ||||||||||||||| |
|
|
| T |
13666446 |
tcctgtgaagttattgtgatccaaccttaagtcgaaacaattcattgttaagttagatatgtcttc |
13666511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 80 - 192
Target Start/End: Original strand, 2709985 - 2710097
Alignment:
| Q |
80 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaa-ttctattggacattggtgatatgttcgggagtcctcctgtgaa |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | | ||||||||||||||| |||||||||||||| || |
|
|
| T |
2709985 |
caagttcttccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaacttcaagt-gccattggtgatatgtttgggagtcctcctgtaaa |
2710083 |
T |
|
| Q |
179 |
actattgtgatcca |
192 |
Q |
| |
|
| ||||||| |||| |
|
|
| T |
2710084 |
attattgtggtcca |
2710097 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 194
Target Start/End: Complemental strand, 15536196 - 15536013
Alignment:
| Q |
11 |
agcagagaggtgtgttagaacttcaccagacagcctattactccatacattcaagacttccagttctgacaagttcttccaactatgtggaattgatcct |
110 |
Q |
| |
|
|||||||||||| || ||||||||||||||| |||||| |||| | |||| |||| || ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15536196 |
agcagagaggtgcattggaacttcaccagacaaactattattccacaggttcatgactgtcaattcattcaagttcttccaactatgtggaattgatcct |
15536097 |
T |
|
| Q |
111 |
gagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtgatccaac |
194 |
Q |
| |
|
||||||||||||||||| ||||||| || | ||||||||||||| |||||||||||||| || ||||||| |||||| |
|
|
| T |
15536096 |
gagaaggagttgtaagaaaaatcaaccataacaacccttggtgatatgtttgggagtcctcctgtataattattgtggtccaac |
15536013 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 8460131 - 8460027
Alignment:
| Q |
88 |
tccaactatgtggaattgatcctgagaaggagttgtaagacaaatcaattctattggacattggtgatatgttcgggagtcctcctgtgaaactattgtg |
187 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| | | | | | ||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
8460131 |
tccaaatatgtggaattgatcctgagaaggagttgtaagacaaatcaactaggtcagtccctactgatatgtttgggagtcctcctgtgaaattattgtg |
8460032 |
T |
|
| Q |
188 |
atcca |
192 |
Q |
| |
|
||||| |
|
|
| T |
8460031 |
atcca |
8460027 |
T |
|
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