View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5881_low_2 (Length: 440)
Name: NF5881_low_2
Description: NF5881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5881_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 32988648 - 32989083
Alignment:
| Q |
1 |
cttgccatgtttcaccaccgtccattgttacttcaacacgtgtcacctttctaccaccccctgcacaatcatcaataactgaggttactctctttgtttt |
100 |
Q |
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| T |
32988648 |
cttgccatgtttcaccaccgtccattgttacttcaacacgtgtcacctttctaccaccccctgcacaatcatcaataactgaggttactctctttgtttt |
32988747 |
T |
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| Q |
101 |
caacgaagttcaaagtcaaatacatgtagtgacagcttgaaattagacacagtaaaagaggattagtgcatctttagatttaaattttggggagtcaaaa |
200 |
Q |
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| T |
32988748 |
caacgaagttcaaagtcaaatacatgtagtgacagcttgaaattagacacagtaaaagaggattagtgcatctttagatttaaattttggggagtcaaaa |
32988847 |
T |
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| Q |
201 |
gtgattatgaaacttaataaaattgagtttagactttagacaagaactgattttgactaaaagttagaatatactaacttgttagaaccaaacacaccct |
300 |
Q |
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| T |
32988848 |
gtgattataaaacttaataaaattgagtttagactttagacaagaactgattttgactaaaagttagaatatactaacttgttagaaccaaacacaccct |
32988947 |
T |
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| Q |
301 |
taatctttgggaacaaacaaaaatgattttcctctagttgcaatagtataaaactcacctgaatatgcatagcctctaagtaaataaggcatctgagtag |
400 |
Q |
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| T |
32988948 |
taatctttgggaacaaacaaaaatgattttcctctcgttgcaatagtataaaactcacctgaatatgcatagcctctaagtaaataaggcatctgagtag |
32989047 |
T |
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| Q |
401 |
tgcatgagttgataggcagtatttcatcatggcatg |
436 |
Q |
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| T |
32989048 |
tgcatgagttgataggcagtatttcatcatggcatg |
32989083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 412
Target Start/End: Original strand, 32960286 - 32960355
Alignment:
| Q |
343 |
atagtataaaactcacctgaatatgcatagcctctaagtaaataaggcatctgagtagtgcatgagttga |
412 |
Q |
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| T |
32960286 |
atagaataaaactcaccggaatatgcgtagcctttaagtaaataaggcatcagagtagtgtctgagttga |
32960355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32960162 - 32960228
Alignment:
| Q |
1 |
cttgccatgtttcaccaccgtccattgttacttcaacacgtgtcacctttctaccaccccctgcaca |
67 |
Q |
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| T |
32960162 |
cttgccatgtttcaccaccgtccatcgtcacttccacccttgtcacctttctcccaccaccttcaca |
32960228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 24863665 - 24863724
Alignment:
| Q |
3 |
tgccatgtttcaccaccgtccattgttacttcaacacgtgtcacctttctaccaccccct |
62 |
Q |
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| T |
24863665 |
tgccatgtttctccaccgtccattgttacctcgactcgtgtcacttttctaccaccccct |
24863724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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