View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5881_low_3 (Length: 388)

Name: NF5881_low_3
Description: NF5881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5881_low_3
NF5881_low_3
[»] chr8 (5 HSPs)
chr8 (8-374)||(32966620-32966982)
chr8 (110-344)||(14109494-14109726)
chr8 (110-205)||(35971929-35972024)
chr8 (125-246)||(2706836-2706960)
chr8 (178-254)||(7217006-7217082)
[»] chr5 (6 HSPs)
chr5 (110-254)||(18924390-18924535)
chr5 (143-254)||(7509662-7509774)
chr5 (104-254)||(41196298-41196448)
chr5 (114-171)||(36151717-36151774)
chr5 (178-254)||(29372211-29372287)
chr5 (107-154)||(1014179-1014226)
[»] chr1 (5 HSPs)
chr1 (125-254)||(4108620-4108751)
chr1 (178-237)||(48911957-48912016)
chr1 (104-254)||(16263992-16264147)
chr1 (110-171)||(49303962-49304023)
chr1 (178-254)||(40042795-40042871)
[»] chr7 (8 HSPs)
chr7 (104-254)||(6483797-6483945)
chr7 (104-254)||(37997746-37997903)
chr7 (104-254)||(2946749-2946903)
chr7 (124-254)||(33142175-33142306)
chr7 (126-254)||(328956-329082)
chr7 (124-230)||(32838213-32838317)
chr7 (110-254)||(46409218-46409358)
chr7 (178-254)||(26048877-26048953)
[»] chr3 (4 HSPs)
chr3 (104-254)||(50035594-50035744)
chr3 (124-233)||(21980581-21980693)
chr3 (124-233)||(22003012-22003124)
chr3 (188-254)||(21220500-21220566)
[»] chr2 (4 HSPs)
chr2 (128-254)||(2280100-2280225)
chr2 (124-254)||(8962122-8962255)
chr2 (124-160)||(7355069-7355105)
chr2 (104-171)||(23988555-23988622)
[»] chr4 (2 HSPs)
chr4 (124-254)||(56395791-56395923)
chr4 (178-254)||(43527583-43527659)
[»] chr6 (1 HSPs)
chr6 (110-246)||(26420655-26420792)


Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 374
Target Start/End: Complemental strand, 32966982 - 32966620
Alignment:
Q  8 ccaagaatatctaaatgacaactcatgaaatgatctagtacctttcnnnnnnnntatgaaatgatctagtagtgtgtttgggtaccgtcttggggcaatc 107  Q
    |||| |||| |||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||| |||||||||||||||||||    
T  32966982 ccaacaataactaaatgacaactcatgaaatgatctagtacctttaaaaaaa---atgaaatgatctagtagtgtgtttgtgtaccgtcttggggcaatc 32966886  T
Q  108 acggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagacttgagtgttttttgtataacaaaaatgacatgtgtaa 207  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||| |||| | ||||||||| ||||||||||||||||||||    
T  32966885 acggcgccgtttctcgtaggagacttaaataggtctcctatggtatgagacattaaaaaaga-ttgaatattttttgtacaacaaaaatgacatgtgtaa 32966787  T
Q  208 ccattaaaatgatgaagaacactgatcttataataatccttccacaccttaaacatatcatttctctcttcctctggctttctctcttttcttgccgaca 307  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||    
T  32966786 ccattaaaatgatgaagaacactgatcttataataatccatccacaccttaaacatatcctttctctcttcctctgactttctctcttttcctgccgaca 32966687  T
Q  308 ttgtagcaactgtggtgctgctcagtgtattttaattgagaacaattaacccttaagctttttagtg 374  Q
    | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32966686 tcgtagcaactgtggtgctgctcaatgtattttaattgagaacaattaacccttaagctttttagtg 32966620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 110 - 344
Target Start/End: Complemental strand, 14109726 - 14109494
Alignment:
Q  110 ggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaa-gacttgagtgttttttgtataacaaaaatgacatgtgtaac 208  Q
    |||||| |||||  |||||||||| |||||||||||||  |||||||| ||||||||| ||||   |  |||||||||||||||||||| ||||||||||    
T  14109726 ggcgccatttctggtaggagacttgaataggtctcctacagtaggagacattaaaaaaagact---gatttttttgtataacaaaaatggcatgtgtaac 14109630  T
Q  209 cattaaaatgatgaagaacactgatcttataataatccttccacaccttaaacatatcatttctctcttcctctggctttctctcttttcttgccgacat 308  Q
    |||||||||||||||||||||||||||| | ||||||  ||||  |||| |||||||| ||||||||||||||||  ||||||||||||| ||| || |     
T  14109629 cattaaaatgatgaagaacactgatcttgttataatctctccattcctttaacatatcctttctctcttcctctgaatttctctcttttcctgcagatac 14109530  T
Q  309 tgtagcaactgtggtgctgctcagtgtattttaatt 344  Q
    |||| |||||||| || |||||||| ||||||||||    
T  14109529 tgtatcaactgtgttgatgctcagtatattttaatt 14109494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 205
Target Start/End: Complemental strand, 35972024 - 35971929
Alignment:
Q  110 ggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagacttgagtgttttttgtataacaaaaatgacatgtgt 205  Q
    |||||||||| |  |||||||||| ||||||||||||| ||||||||| |||||||||||||    | |||||| |||||||||||||||||||||    
T  35972024 ggcgccgtttatggtaggagacttgaataggtctcctacggtaggagacattaaaaaagactgtttttttttttttataacaaaaatgacatgtgt 35971929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 246
Target Start/End: Original strand, 2706836 - 2706960
Alignment:
Q  125 aggagacttaaataggtctcctatggtaggagatattaaaaaagacttga----gtgttttttgtataacaaaaatgacatgtgtaaccattaaaatgat 220  Q
    ||||||||| ||||||||||| | ||||||||| ||||||||||| ||||     | |||||| | |||||||||||||||||||  |  ||| | |||     
T  2706836 aggagacttgaataggtctcccacggtaggagacattaaaaaaga-ttgatttttttttttttttgtaacaaaaatgacatgtgttgcggttagattgac 2706934  T
Q  221 gaagaacactgatcttataataatcc 246  Q
    |||||||||||||||||  |||||||    
T  2706935 gaagaacactgatcttaccataatcc 2706960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 7217006 - 7217082
Alignment:
Q  178 ttttttgtataacaaaaatgacatgtgtaaccattaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
    |||||| ||||||||||||| |||||||  |  ||| | ||| |||||||||||||||||  ||||||| |||||||    
T  7217006 ttttttttataacaaaaatggcatgtgttgcggttagattgacgaagaacactgatcttaccataatccctccacac 7217082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 254
Target Start/End: Complemental strand, 18924535 - 18924390
Alignment:
Q  110 ggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagacttgagtgtttttt--gtataacaaaaatgacatgtgtaa 207  Q
    |||||||||||  ||||||||||| ||||||||||| | |||||||||  |||||||  ||| || | ||||||  |||||||||||||||| ||||| |    
T  18924535 ggcgccgtttccgataggagacttgaataggtctcccacggtaggagactttaaaaagtact-gatttttttttttgtataacaaaaatgacttgtgtca 18924437  T
Q  208 ccattaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
    ||||| || |||||||||||| ||||||||  ||||||| |||||||    
T  18924436 ccattgaattgatgaagaacattgatcttactataatccctccacac 18924390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 7509774 - 7509662
Alignment:
Q  143 tcctatggtaggagatattaaaaaagacttga--gtgttttttgtataacaaaaatgacatgtgtaaccattaaaatgatgaagaacactgatcttataa 240  Q
    ||||| ||||||||| ||||||||||| ||||   | |||||||||| ||||||||||||| ||| ||||||| | |||||||||||||||||||||       
T  7509774 tcctacggtaggagacattaaaaaaga-ttgatttttttttttgtatcacaaaaatgacatttgtcaccattagattgatgaagaacactgatcttactg 7509676  T
Q  241 taatccttccacac 254  Q
    |||||| |||||||    
T  7509675 taatccctccacac 7509662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 41196298 - 41196448
Alignment:
Q  104 aatcacggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagacttgagtgttttttgtataacaaaaatgacatgt 203  Q
    |||| ||||||||||| |  |||||||||| ||||||||||| | || |||||| |||||||||||||    | |||||| |||||||||||||||||||    
T  41196298 aatctcggcgccgtttatggtaggagacttgaataggtctcccacggaaggagacattaaaaaagactgtttttttttttttataacaaaaatgacatgt 41196397  T
Q  204 gtaaccattaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
    ||  |  ||| | ||| |||||||| ||||||||  |||||| ||| ||||    
T  41196398 gttgcggttagattgacgaagaacattgatcttaccataatctttctacac 41196448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 36151774 - 36151717
Alignment:
Q  114 ccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagact 171  Q
    |||||| | |||||| |||| ||||||||||| | |||||||||||||||||||||||    
T  36151774 ccgtttatgataggaaacttgaataggtctcccacggtaggagatattaaaaaagact 36151717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 29372287 - 29372211
Alignment:
Q  178 ttttttgtataacaaaaatgacatgtgtaaccattaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
    |||||| ||| ||||||||||||| ||| ||||||| | |||||||||||| ||||||||   |||||| |||||||    
T  29372287 ttttttttatcacaaaaatgacatttgtcaccattagattgatgaagaacattgatcttactgtaatccctccacac 29372211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 1014226 - 1014179
Alignment:
Q  107 cacggcgccgtttctcataggagacttaaataggtctcctatggtagg 154  Q
    ||||||||||||||  |||||||||||| |||||||||||| ||||||    
T  1014226 cacggcgccgtttccgataggagacttagataggtctcctacggtagg 1014179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 125 - 254
Target Start/End: Complemental strand, 4108751 - 4108620
Alignment:
Q  125 aggagacttaaataggtctcctatggtaggagatattaaaaaagact--tgagtgttttttgtataacaaaaatgacatgtgtaaccattaaaatgatga 222  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| | |  |   | |||||||||||||||||||||||  ||| ||| ||| | ||||||    
T  4108751 aggagacttaaataggtctcctacggtaggagacattaaaaaatattaattttttttttttgtataacaaaaatgacacttgtcaccgttagattgatga 4108652  T
Q  223 agaacactgatcttataataatccttccacac 254  Q
    |||||| ||||||||  ||||||| |||||||    
T  4108651 agaacattgatcttactataatccctccacac 4108620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 48912016 - 48911957
Alignment:
Q  178 ttttttgtataacaaaaatgacatgtgtaaccattaaaatgatgaagaacactgatctta 237  Q
    |||||||||||||||||||||||| ||| ||||||| | |||||||||||| ||||||||    
T  48912016 ttttttgtataacaaaaatgacatttgtcaccattagattgatgaagaacattgatctta 48911957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 16263992 - 16264147
Alignment:
Q  104 aatcacggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagac----ttgagtgttttt-tgtataacaaaaatga 198  Q
    |||| ||||||||||| |  |||||||||| ||||||||||| | || |||||| ||||||||||||    ||   | ||||| | ||||||||||||||    
T  16263992 aatctcggcgccgtttatggtaggagacttgaataggtctcccacgggaggagacattaaaaaagactgttttttttatttttatatataacaaaaatga 16264091  T
Q  199 catgtgtaaccattaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
    |||||||  |  ||| | ||| |||||||||||||||||  |||||||||| ||||    
T  16264092 catgtgttgcggttagattgacgaagaacactgatcttaccataatccttctacac 16264147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 49303962 - 49304023
Alignment:
Q  110 ggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagact 171  Q
    |||||||||| |  |||||||||| ||||| ||| | | |||||||||||||||||||||||    
T  49303962 ggcgccgtttatggtaggagacttgaatagatcttccacggtaggagatattaaaaaagact 49304023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 40042871 - 40042795
Alignment:
Q  178 ttttttgtataacaaaaatgacatgtgtaaccattaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
    |||||| ||||||||||||||  ||||| ||||  | | ||||| ||||||| |||||||  |||||||||||||||    
T  40042871 ttttttatataacaaaaatgaattgtgttaccaagagattgatggagaacaccgatcttactataatccttccacac 40042795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 6483797 - 6483945
Alignment:
Q  104 aatcacggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagacttgagtgttttttgtataacaaaaatgacatgt 203  Q
    |||| ||||||||||| |  |||||||||| ||||||||||| |  | |||||| |||||||||||| ||| | |||||| |||||||||||||||||||    
T  6483797 aatctcggcgccgtttatggtaggagacttgaataggtctcccacaggaggagacattaaaaaagac-tga-ttttttttatataacaaaaatgacatgt 6483894  T
Q  204 gtaaccattaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
    ||  |  ||| | ||| |||||||||||||||||  |||||||||| ||||    
T  6483895 gttgcggttagattgacgaagaacactgatcttaccataatccttctacac 6483945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 254
Target Start/End: Complemental strand, 37997903 - 37997746
Alignment:
Q  104 aatcacggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagact-------tgagtgttttttgtataacaaaaat 196  Q
    |||| ||||||||||| |  |||||||||| ||||||||||| | || |||||| |||||||||||||       |   | |||||| ||||||||||||    
T  37997903 aatctcggcgccgtttatggtaggagacttgaataggtctcccacgggaggagacattaaaaaagactgatttttttttttttttttttataacaaaaat 37997804  T
Q  197 gacatgtgtaaccattaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
    |||||||||  |  ||| | ||| |||||||||||||||||  |||||||||| ||||    
T  37997803 gacatgtgttgcggttagattgacgaagaacactgatcttaccataatccttctacac 37997746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 2946749 - 2946903
Alignment:
Q  104 aatcacggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagac----ttgagtgttttttgtataacaaaaatgac 199  Q
    |||| ||||||||||| |  |||||||||| ||||||||||| | || |||||| ||||||||||||    ||   | ||| || |||||||||||||||    
T  2946749 aatctcggcgccgtttatggtaggagacttgaataggtctcccacgggaggagacattaaaaaagactgttttatttatttattttataacaaaaatgac 2946848  T
Q  200 atgtgtaaccattaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
    ||||||  |  ||| | ||| ||| |||||||||||||  |||||||||| ||||    
T  2946849 atgtgttgcggttagattgacgaaaaacactgatcttaccataatccttctacac 2946903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 33142175 - 33142306
Alignment:
Q  124 taggagacttaaataggtctcctatggtaggagatattaaaaaagacttgagtgttttttgt--ataacaaaaatgacatgtgtaaccattaaaatgatg 221  Q
    |||||||||| ||||| ||||| | || ||||||  |||||||||| |||| | |||||| |  ||||||||||||||||||||  |  ||| | ||| |    
T  33142175 taggagacttgaatagatctcccacgggaggagactttaaaaaaga-ttgattttttttttttaataacaaaaatgacatgtgttgcggttagattgacg 33142273  T
Q  222 aagaacactgatcttataataatccttccacac 254  Q
    ||||||||||||||||  |||||||||| ||||    
T  33142274 aagaacactgatcttaccataatccttctacac 33142306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 329082 - 328956
Alignment:
Q  126 ggagacttaaataggtctcctatggtaggagatattaaaaaagacttgagtgttttttgtataacaaaaatgacatgtgtaaccattaaaatgatgaaga 225  Q
    |||||||| ||| ||||||||| |||||||||  ||| |||| ||| || | |||||  |||||||||||||||| |||| ||||||| | ||  |||||    
T  329082 ggagacttcaatgggtctcctacggtaggagaccttataaaaaact-gatt-tttttaatataacaaaaatgacaagtgttaccattagattggcgaaga 328985  T
Q  226 acactgatcttataataatccttccacac 254  Q
    |||| ||| |||| ||||||| |||||||    
T  328984 acaccgatattattataatccctccacac 328956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 230
Target Start/End: Original strand, 32838213 - 32838317
Alignment:
Q  124 taggagacttaaataggtctcctatggtaggagatattaaaaaagacttgagtgttttttgtataacaaaaatgacatgtgtaaccattaaaatgatgaa 223  Q
    |||||||||| ||||||||||||| ||||||||| |||| ||||||    | | |||||| | ||||||  ||||||||||| || |||| | |||||||    
T  32838213 taggagacttgaataggtctcctacggtaggagacattataaaaga--gaatttttttttatttaacaatgatgacatgtgttactattagattgatgaa 32838310  T
Q  224 gaacact 230  Q
    |||||||    
T  32838311 gaacact 32838317  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 254
Target Start/End: Complemental strand, 46409358 - 46409218
Alignment:
Q  110 ggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagacttgagtgttttttgtataacaaaaatgacatgtgtaacc 209  Q
    |||||||||| |  |||||||||| ||||||||||  |  |||||||| |||||||| ||||   |  |||||| ||||||||||||| |||||||  |     
T  46409358 ggcgccgtttatggtaggagacttgaataggtctctcacagtaggagacattaaaaa-gact---gatttttttttataacaaaaatgtcatgtgttgcg 46409263  T
Q  210 attaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
     ||| | ||| |||||||||||||||||  ||||||| |||||||    
T  46409262 gttagattgacgaagaacactgatcttaccataatccctccacac 46409218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 26048877 - 26048953
Alignment:
Q  178 ttttttgtataacaaaaatgacatgtgtaaccattaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
    |||||| | ||||||||||||||| ||| || |||| | |||||||||||| || |||||  ||||||| |||||||    
T  26048877 ttttttttttaacaaaaatgacatatgttactattagattgatgaagaacattggtcttactataatccctccacac 26048953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 104 - 254
Target Start/End: Original strand, 50035594 - 50035744
Alignment:
Q  104 aatcacggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagacttgagtgttttttgt-ataacaaaaatgacatg 202  Q
    |||| ||||||||||| |  |||||||||| ||||| ||||| | || |||||| ||||||||||| |||| | |||||| | |||||||||||||||||    
T  50035594 aatctcggcgccgtttatggtaggagacttgaatagatctcccacgggaggagacattaaaaaaga-ttgatttttttttttaataacaaaaatgacatg 50035692  T
Q  203 tgtaaccattaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
    |||  |  ||| | ||| |||||||||||||||||  |||||||||| ||||    
T  50035693 tgttgcggttagattgacgaagaacactgatcttaccataatccttctacac 50035744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 21980581 - 21980693
Alignment:
Q  124 taggagacttaaataggtctcctatggtaggagatattaaaaaa---gacttgagtgttttttgtataacaaaaatgacatgtgtaaccattaaaatgat 220  Q
    ||||||| |||||||||||||||| | ||||||| ||||||||    || ||   | |||||||| | ||||||||||||| ||| ||||||| | ||||    
T  21980581 taggagatttaaataggtctcctacgataggagacattaaaaagattgattttttttttttttgtgtcacaaaaatgacatttgtcaccattagattgat 21980680  T
Q  221 gaagaacactgat 233  Q
    |||||||||||||    
T  21980681 gaagaacactgat 21980693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 22003012 - 22003124
Alignment:
Q  124 taggagacttaaataggtctcctatggtaggagatattaaaaaa---gacttgagtgttttttgtataacaaaaatgacatgtgtaaccattaaaatgat 220  Q
    ||||||| |||||||||||||||| | ||||||| ||||||||    || ||   | |||||||| | ||||||||||||| ||| ||||||| | ||||    
T  22003012 taggagatttaaataggtctcctacgataggagacattaaaaagattgattttttttttttttgtgtcacaaaaatgacatttgtcaccattagattgat 22003111  T
Q  221 gaagaacactgat 233  Q
    |||||||||||||    
T  22003112 gaagaacactgat 22003124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 21220566 - 21220500
Alignment:
Q  188 aacaaaaatgacatgtgtaaccattaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
    ||||||||| |||||||| | ||||| | ||||||||||| ||||||||||  |||||| |||||||    
T  21220566 aacaaaaataacatgtgttaacattagattgatgaagaacgctgatcttattgtaatccctccacac 21220500  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 254
Target Start/End: Complemental strand, 2280225 - 2280100
Alignment:
Q  128 agacttaaataggtctcctatggtaggagatattaaaaaagacttgagtgttttttgtataacaaaaatgacatgtgtaaccattaaaatgatgaagaac 227  Q
    |||||| |||| |||||||| ||||||||| ||||||||| ||| || | ||||||||||||||||||||| |  ||| ||| ||| | ||| |||||||    
T  2280225 agacttgaataagtctcctacggtaggagacattaaaaaatact-gatttttttttgtataacaaaaatgaaacttgtcaccgttatattgacgaagaac 2280127  T
Q  228 actgatcttataataatccttccacac 254  Q
    | ||||||||  ||||||| |||||||    
T  2280126 attgatcttactataatccctccacac 2280100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 254
Target Start/End: Complemental strand, 8962255 - 8962122
Alignment:
Q  124 taggagacttaaataggtctcctatggtaggagatattaaaaaagacttgagtgttttttgtata----acaaaaatgacatgtgtaaccattaaaatga 219  Q
    ||||||||||||||||||||||||  |||||||| |||| ||||  || || | |||||| | ||    ||||||||||  ||||||||||||| | |||    
T  8962255 taggagacttaaataggtctcctactgtaggagacattataaaaagct-gatttttttttttttatgcaacaaaaatgaactgtgtaaccattagattga 8962157  T
Q  220 tgaagaacactgatcttataataatccttccacac 254  Q
    ||||||| || |||||||  |||||||||| ||||    
T  8962156 tgaagaagaccgatcttactataatccttcaacac 8962122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 7355069 - 7355105
Alignment:
Q  124 taggagacttaaataggtctcctatggtaggagatat 160  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7355069 taggagacttaaatatgtctcctatggtaggagatat 7355105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 23988555 - 23988622
Alignment:
Q  104 aatcacggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagact 171  Q
    |||| ||||||||||| |  |||||||||| ||||||||||| | || |||||| |||||||||||||    
T  23988555 aatctcggcgccgtttatggtaggagacttgaataggtctcccacgggaggagaaattaaaaaagact 23988622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 254
Target Start/End: Original strand, 56395791 - 56395923
Alignment:
Q  124 taggagacttaaataggtctcctatggtaggagatattaaaaaagacttga--gtgttttttgtataacaaaaatgacatgtgtaaccattaaaatgatg 221  Q
    |||||||||| ||||||||||| | || |||||| ||||||||| |||  |   | |||||| |||||||||||||||||||||  |  ||| | ||| |    
T  56395791 taggagacttgaataggtctcccacgggaggagacattaaaaaatactgaatttttttttttttataacaaaaatgacatgtgttgcggttagattgacg 56395890  T
Q  222 aagaacactgatcttataataatccttccacac 254  Q
    ||||||||||||||||  |||||||||| ||||    
T  56395891 aagaacactgatcttaccataatccttctacac 56395923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 43527659 - 43527583
Alignment:
Q  178 ttttttgtataacaaaaatgacatgtgtaaccattaaaatgatgaagaacactgatcttataataatccttccacac 254  Q
    |||||| || |||||||||||  ||||||||||||| | ||||||||||||| |||| ||  ||||||||| |||||    
T  43527659 ttttttatacaacaaaaatgaattgtgtaaccattagattgatgaagaacaccgatcatactataatcctttcacac 43527583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 246
Target Start/End: Complemental strand, 26420792 - 26420655
Alignment:
Q  110 ggcgccgtttctcataggagacttaaataggtctcctatggtaggagatattaaaaaagact-tgagtgttttttgtataacaaaaatgacatgtgtaac 208  Q
    |||||||||| |  |||||||||| ||||||||||| | ||||||||| | ||||||||||| |     |||||| | |||||||||||||||||||  |    
T  26420792 ggcgccgtttatggtaggagacttgaataggtctcccacggtaggagacaataaaaaagactgttttctttttttttgtaacaaaaatgacatgtgttgc 26420693  T
Q  209 cattaaaatgatgaagaacactgatcttataataatcc 246  Q
      ||| | ||| |||||||||||||||||  |||||||    
T  26420692 ggttagattgacgaagaacactgatcttaccataatcc 26420655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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