View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5881_low_7 (Length: 354)

Name: NF5881_low_7
Description: NF5881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5881_low_7
NF5881_low_7
[»] chr3 (3 HSPs)
chr3 (254-338)||(53553625-53553709)
chr3 (265-338)||(1259279-1259352)
chr3 (265-338)||(37242567-37242640)
[»] chr5 (2 HSPs)
chr5 (279-338)||(36989055-36989114)
chr5 (279-324)||(40296118-40296163)
[»] chr1 (1 HSPs)
chr1 (279-333)||(32774127-32774181)
[»] chr2 (4 HSPs)
chr2 (277-338)||(11272556-11272617)
chr2 (271-338)||(33858646-33858713)
chr2 (279-336)||(13016050-13016107)
chr2 (300-333)||(1479466-1479499)
[»] chr8 (5 HSPs)
chr8 (265-333)||(9936427-9936495)
chr8 (291-338)||(8273862-8273909)
chr8 (299-338)||(36404084-36404123)
chr8 (299-338)||(37269863-37269902)
chr8 (299-338)||(42941266-42941305)
[»] chr7 (3 HSPs)
chr7 (265-333)||(42460087-42460155)
chr7 (278-338)||(31234744-31234804)
chr7 (284-327)||(21245198-21245241)
[»] chr6 (3 HSPs)
chr6 (265-333)||(1034330-1034399)
chr6 (265-338)||(18246532-18246605)
chr6 (272-338)||(2920929-2920995)
[»] chr4 (1 HSPs)
chr4 (265-338)||(16989632-16989705)
[»] scaffold0760 (1 HSPs)
scaffold0760 (299-338)||(1742-1781)


Alignment Details
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 53553625 - 53553709
Alignment:
Q  254 atagcatatccaaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    |||||| ||||||||  |||| || |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  53553625 atagcagatccaaaaaacagcgcctttcatctcctatttaggcactctctaggattccaagtccactcataaaagaggaaagaag 53553709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 1259279 - 1259352
Alignment:
Q  265 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    ||||| |||||  |||||||| || ||||| || ||||  |||||||| |||||||||||||||||||||||||    
T  1259279 aaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaag 1259352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 37242567 - 37242640
Alignment:
Q  265 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    ||||| |||||  |||||||| || ||||| || ||||  |||||||| |||||||||||||||||||||||||    
T  37242567 aaaagacagccgtgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaag 37242640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 36989114 - 36989055
Alignment:
Q  279 ttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    ||||||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||    
T  36989114 ttcatctccttgttagacactctctaggattccacgtccacttatagaagaggaaagaag 36989055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 40296118 - 40296163
Alignment:
Q  279 ttcatctcctttttaggcactctctaggattccaagtccactcata 324  Q
    ||||||| || ||||| |||||| ||||||||||||||||||||||    
T  40296118 ttcatcttctatttagacactctttaggattccaagtccactcata 40296163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 32774127 - 32774181
Alignment:
Q  279 ttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaa 333  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||    
T  32774127 ttcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaa 32774181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 277 - 338
Target Start/End: Complemental strand, 11272617 - 11272556
Alignment:
Q  277 cgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    ||||||||| || ||| |||||||||||||| ||||||| ||||||||||||||||||||||    
T  11272617 cgttcatcttctatttgggcactctctaggaatccaagttcactcatagaagaggaaagaag 11272556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 338
Target Start/End: Original strand, 33858646 - 33858713
Alignment:
Q  271 cagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    ||||| ||||||||| || ||||| || |||| ||||||||||||||||||||| |||||||| ||||    
T  33858646 cagccacgttcatcttctatttagacattctcgaggattccaagtccactcatataagaggaaggaag 33858713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 13016050 - 13016107
Alignment:
Q  279 ttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaaga 336  Q
    ||||||| || || ||||||||||| |||||||||||||||||||| ||||| |||||    
T  13016050 ttcatcttctattaaggcactctctcggattccaagtccactcataaaagagaaaaga 13016107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 333
Target Start/End: Original strand, 1479466 - 1479499
Alignment:
Q  300 ctctaggattccaagtccactcatagaagaggaa 333  Q
    ||||||||||||||||||||||||| ||||||||    
T  1479466 ctctaggattccaagtccactcataaaagaggaa 1479499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 9936495 - 9936427
Alignment:
Q  265 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaa 333  Q
    |||||||||| || ||||||| || |||||||||| |||||| ||||||||||||||||| ||||||||    
T  9936495 aaaagccagcacctttcatcttctatttaggcactgtctagggttccaagtccactcataaaagaggaa 9936427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 8273909 - 8273862
Alignment:
Q  291 ttaggcactctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||    
T  8273909 ttagacactctctaggattccaaatccactcataaaagaggaaagaag 8273862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 36404084 - 36404123
Alignment:
Q  299 tctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  36404084 tctctaggattccaagtccactcgtagaagaggaaggaag 36404123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 37269863 - 37269902
Alignment:
Q  299 tctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  37269863 tctctaggattccaagtccactcataaaagaggaaggaag 37269902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 338
Target Start/End: Complemental strand, 42941305 - 42941266
Alignment:
Q  299 tctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  42941305 tctctaggattccaagtccactcataaaagaggaaggaag 42941266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 265 - 333
Target Start/End: Original strand, 42460087 - 42460155
Alignment:
Q  265 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaa 333  Q
    ||||| |||| || ||||||| || ||||||||||||||||||||||||||| ||||||| ||||||||    
T  42460087 aaaaggcagcacctttcatcttctatttaggcactctctaggattccaagtctactcataaaagaggaa 42460155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 338
Target Start/End: Original strand, 31234744 - 31234804
Alignment:
Q  278 gttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    |||||||| || ||||| || ||||  ||||||||||||||||||||||||||||||||||    
T  31234744 gttcatcttctgtttagacattctcgtggattccaagtccactcatagaagaggaaagaag 31234804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 327
Target Start/End: Original strand, 21245198 - 21245241
Alignment:
Q  284 ctcctttttaggcactctctaggattccaagtccactcatagaa 327  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||    
T  21245198 ctcctctttaggcactctctaggattccacgaccactcatagaa 21245241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 333
Target Start/End: Complemental strand, 1034399 - 1034330
Alignment:
Q  265 aaaagccagccccgttcatctcctt-tttaggcactctctaggattccaagtccactcatagaagaggaa 333  Q
    ||||| |||| || ||||||||| | |||||||||||| |||||||||||||||||||||| ||||||||    
T  1034399 aaaagacagcacctttcatctccctatttaggcactctttaggattccaagtccactcataaaagaggaa 1034330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 18246532 - 18246605
Alignment:
Q  265 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    ||||| ||||| ||||||||| || ||||| || ||||  |||||||| |||||||||||||||||||||||||    
T  18246532 aaaagacagccgcgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaag 18246605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 338
Target Start/End: Original strand, 2920929 - 2920995
Alignment:
Q  272 agccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    |||| ||||||||| || ||||| || ||||  |||||||| ||||||||||| |||||||||||||    
T  2920929 agccacgttcatcttctgtttagacattctcgtggattccatgtccactcataaaagaggaaagaag 2920995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 16989705 - 16989632
Alignment:
Q  265 aaaagccagccccgttcatctcctttttaggcactctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    ||||| ||||| ||||||||| || ||||| || ||||  |||||||| |||||||||||||||||||||||||    
T  16989705 aaaagacagccgcgttcatcttctgtttagacattctcatggattccacgtccactcatagaagaggaaagaag 16989632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 1742 - 1781
Alignment:
Q  299 tctctaggattccaagtccactcatagaagaggaaagaag 338  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  1742 tctctaggattccaagtccactcataaaagaggaaggaag 1781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University