View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5882-Insertion-1 (Length: 1080)
Name: NF5882-Insertion-1
Description: NF5882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5882-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 9 - 455
Target Start/End: Complemental strand, 14241346 - 14240899
Alignment:
| Q |
9 |
aaaggtccttattctagggtcatttttgctaagacatacctctccaaaaccgttgtcccagaa-ggatggaccaattggagttacgacggtagcacagag |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||| |||||||||||||| |
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| T |
14241346 |
aaaggtccttattctagggtcatttttgctaagacatacctcttcaaaaccgttgttccagaaaggatggaccaattggagttatgacggtagcacagaa |
14241247 |
T |
|
| Q |
108 |
taagaacattatcatctacaccattagattaatgtatatattggtaaaaattaataattaattttggttatttgttatgaattatagacatctttaccat |
207 |
Q |
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||||| ||||||||| |||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14241246 |
taagagcattatcatttacaccattagattaatgtatacatttgtgaaaattaataattaattttggttatttgttatgaattatagacatctttaccat |
14241147 |
T |
|
| Q |
208 |
gcggagtataaatgtcatggacctggagccacaacagatggaagggcttcttggtcaaggcagcttagtgatgaagaagctgctccatttatatctattg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14241146 |
gcggagtataaatgtcatggacctggagccacaacacagggaagagcttcttggtcaaggcagcttagtgatgaagaagctgctccatttatatctattg |
14241047 |
T |
|
| Q |
308 |
attacattgatggcaagaattggttaccagcttggatataatcatatcatgcatgtttgttcataaactcgagctatggaatatgatcaacagtagagcg |
407 |
Q |
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| T |
14241046 |
attacattgatggcaagaattggttaccagcttggatataatcatatcatgcatgtttgtgcataaactcgatctatggaatatgatcaagagtagagtg |
14240947 |
T |
|
| Q |
408 |
tgcaatttcaatagtattcgagccaaaggaaacaaggttaaacacgaa |
455 |
Q |
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| T |
14240946 |
tgcaatttcaatagtattcgagccaaaggaaataaggttaaacacgaa |
14240899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 127 - 357
Target Start/End: Original strand, 12957772 - 12958005
Alignment:
| Q |
127 |
accattagattaatgtatatattg---gtaaaaattaataattaattttggttatttgttatgaattatagacatctttaccatgcggagtataaatgtc |
223 |
Q |
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||||||||||||||||||| |||| || |||| ||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| | |
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| T |
12957772 |
accattagattaatgtatacattgttggtgaaaaataataattaattttggttatttgttttaaactatagacatctttaccatgcggagtataaatgcc |
12957871 |
T |
|
| Q |
224 |
atggacctggagccacaacagatggaagggcttcttggtcaaggcagcttagtgatgaagaagctgctccatttatatctattgattacattgatggcaa |
323 |
Q |
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||||||||||||||| | |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12957872 |
atggacctggagccatagcagagaaaagagcttcttggtcaaggcaacttagtgatgaagaagctgctccatttatatctattgattacattgatggcaa |
12957971 |
T |
|
| Q |
324 |
gaattggttaccagcttggatataatcatatcat |
357 |
Q |
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||||||||||||||| ||| |||||||||||||| |
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| T |
12957972 |
gaattggttaccagcatggctataatcatatcat |
12958005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 12957607 - 12957720
Alignment:
| Q |
9 |
aaaggtccttattctagggtcatttttgctaagacatacctctccaaaaccgttgtcccagaaggatggaccaattggagttacgacggtagcacagagt |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |||| |
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| T |
12957607 |
aaaggtccttattctagggtcatttttgctaagacatacctctccaaaaccattgtcccagaaggatggaccaattggagttatgatggtagcactgagt |
12957706 |
T |
|
| Q |
109 |
aagaacattatcat |
122 |
Q |
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|||||||||||||| |
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|
| T |
12957707 |
aagaacattatcat |
12957720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 525 - 610
Target Start/End: Complemental strand, 14240767 - 14240681
Alignment:
| Q |
525 |
atttgtccttgttatccatattctaaaatatcaannnnnnn-cctccaaattttataaaaatagcttaacaaagtttaacaatcaag |
610 |
Q |
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| T |
14240767 |
atttgtccttgttatccatattctaaaatatcaattttttttcctccaaattttataaaaatagcttaacaaagtttaacaatcaag |
14240681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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