View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5882-Insertion-2 (Length: 833)
Name: NF5882-Insertion-2
Description: NF5882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5882-Insertion-2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 9 - 500
Target Start/End: Original strand, 36161546 - 36162037
Alignment:
| Q |
9 |
gtgtttgtgtccaagaggaagatggtagttaattaannnnnnnaatacttgctagtttgaatagtttttatatctgatttcaaaagtttaaccttagact |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36161546 |
gtgtttgtgtccaagaggaagatggtaattaattaatttttttaatacttgctagtttgaataatttttatatctgatttcaaaagtttaaccttagact |
36161645 |
T |
|
| Q |
109 |
tactgtggcnnnnnnnnaattgatttaatttcaggtatgcaatttgctgtttctttattctggtttgccttgtagctgttatcctttttatcattgatat |
208 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36161646 |
tactgtggcttttttttaattgatttaatttcaggtatgcaatttgctgtttctttattctggtttgccttgtagctgttatcctttttatcattgatat |
36161745 |
T |
|
| Q |
209 |
cgttcatcatcataaataaagctacatgaattttctcaattagagaatggaaaatgacgttaggatgatggttagatgcatgtaaaatgacgttaaatgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36161746 |
cgttcatcatcataaataaagctacatgaattttctcaattagagaatggaaaatgacgttaggatgatggttagatgcatgtaaaatgacgttaaatgt |
36161845 |
T |
|
| Q |
309 |
ttttggtgttatccctcaaaaaatatgtttttagtgttagtttgttagatgcatgtatttggtgtctggatattaacatcgcaaaaattctattatatga |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36161846 |
ttttggtgttatccctcaaaaaatatgtttttggtgttagtttgttagatgcatgtatttggtgtctggatattaacatcgcaaaaattctattatatga |
36161945 |
T |
|
| Q |
409 |
gcaatggagagcattataggtacaaataaatatgctaagaaatatgatatgttaataactttctagaatatgctagagtatatttagaaatc |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36161946 |
gcaatggagagcattataggtacaaataaatatgctaagaaatatgatatgttaataactttctagaatatgctagagtatatttagaaatc |
36162037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 699 - 817
Target Start/End: Original strand, 36162681 - 36162801
Alignment:
| Q |
699 |
tatgagagagaaaattatcaaaaa--tattgtcataaaatagttctacaaatatatttcttttgcaatatcatggagaaagaaatgaaggaacgaatcta |
796 |
Q |
| |
|
||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36162681 |
tatgagagataaaattataaaaaaaatattatcataaaatagttctacaaatatatttcttttgcaatatcatggagaaagaaatgaaggaacgaatcta |
36162780 |
T |
|
| Q |
797 |
gtacctgattgagaatgctat |
817 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
36162781 |
gtacctgaatgagaatgctat |
36162801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 603 - 645
Target Start/End: Original strand, 36162142 - 36162184
Alignment:
| Q |
603 |
agaggtttgttatttgaacaatcatttgcatgacaaattatga |
645 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36162142 |
agaggtttgttatttgaacaatcatttgcatgacaaattatga |
36162184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 613 - 649
Target Start/End: Original strand, 1284923 - 1284959
Alignment:
| Q |
613 |
tatttgaacaatcatttgcatgacaaattatgagaca |
649 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1284923 |
tatttgaacaatcatttgcatgacaatttatgagaca |
1284959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 698 - 750
Target Start/End: Original strand, 16447258 - 16447309
Alignment:
| Q |
698 |
atatgagagagaaaattatcaaaaatattgtcataaaatagttctacaaatat |
750 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||| |
|
|
| T |
16447258 |
atatgagagagaaaattatcaaaaa-attgtaataaaatggttgtacaaatat |
16447309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 699 - 750
Target Start/End: Original strand, 28647448 - 28647498
Alignment:
| Q |
699 |
tatgagagagaaaattatcaaaaatattgtcataaaatagttctacaaatat |
750 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
28647448 |
tatgagagagaaaattgtcaaaaa-attgtaataaaatagttatacaaatat |
28647498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University