View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5884-Insertion-2 (Length: 734)
Name: NF5884-Insertion-2
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 235 - 605
Target Start/End: Original strand, 7868979 - 7869342
Alignment:
| Q |
235 |
tgtcttttttattcagatgaaaactatcaaatatcaaacaccgtagccaactcaaagattatgttgtcaaaatagaacctactgatccaatgaatagctc |
334 |
Q |
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| T |
7868979 |
tgtcttttttatttagatgaaaactatcaaa-------cgccgtagccaactcaaagattatgttgttaaaatagaacctaccgatccaatgaatagctc |
7869071 |
T |
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| Q |
335 |
gacaaagatcgaaagcttcttnnnnnnnnn--gaacccatcaatccaatgaatagctcgacaaagatcgaaagcttccccttcttaattgtcaaatatgg |
432 |
Q |
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| T |
7869072 |
gacaaagatcgaaagcttcttaaaaaaaaaaagaacctaccaatccaatgaatagctcgacaaagatcgaaagcttccccttcttaattgttagatatgg |
7869171 |
T |
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| Q |
433 |
gttaaatgtcgtcgtttttgcatgnnnnnnnnntgttcttcgccatcacgtaaacacatttcaatgtccacttaattattataggtgagattagttgtga |
532 |
Q |
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| T |
7869172 |
gttaaatgtcgtcgttttcgcatgaaaaaaa--tattcttcgccatcacgtaaacacatttcaatgcccacttaattattataggtgagatcagttgtga |
7869269 |
T |
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| Q |
533 |
attcatacaatatcgtaactcacttttttgcaaagaatggcctcgccaacagaaggagtaagtgagtattgtc |
605 |
Q |
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| T |
7869270 |
attcatgcaatatcgtaactcattcttttgcaaagaatggcctcgccaacagaaggagtgagtgagtattgtc |
7869342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 661 - 732
Target Start/End: Original strand, 7869398 - 7869466
Alignment:
| Q |
661 |
ccatacaccaaaactattattatacccataccctataaattattaaaaatactaattttagcccttttaaaa |
732 |
Q |
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| T |
7869398 |
ccatacaccaaaactattat---acctataccctataaattattaaaaatactaattttagcccttttaaaa |
7869466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 7868507 - 7868558
Alignment:
| Q |
9 |
ataggacggtggaagtagatatcattgatgagagtgacaagcaagatgtgtg |
60 |
Q |
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| T |
7868507 |
ataggacggtggaagtagatatcattgatgagagtgacaagcaagatgtgtg |
7868558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 7868805 - 7868907
Alignment:
| Q |
55 |
tgtgtgtcattagcaatagcttgttcaatataacccgggttagcaccaatcatacatgtagctgcttgaactcgctcatgaactac--tattagattgtg |
152 |
Q |
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| T |
7868805 |
tgtgtctcattagcaatagcttgttcaatataacccgggttagcaccgatc----------ctgcttgaactcgttcatgacctactatattagattgtg |
7868894 |
T |
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| Q |
153 |
tcctaatgaactc |
165 |
Q |
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| T |
7868895 |
tcctaatgaactc |
7868907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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