View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5884-Insertion-3 (Length: 496)
Name: NF5884-Insertion-3
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 8e-59; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 346 - 489
Target Start/End: Complemental strand, 7879558 - 7879415
Alignment:
| Q |
346 |
aatcgatcaaccgaagagcgcatgaagagagttaattgctgctggatcatgacgagattgcaagataaaggttttgtttccagacaattccttctgtgct |
445 |
Q |
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| T |
7879558 |
aatccatcaaccgaagagcgcatgaagagagttaatcgctgctggatcatgacgagattgcaagataaaggttttgattccaaacaattccttccgtgct |
7879459 |
T |
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| Q |
446 |
ttagttttcttatgatttctggttcaatcacagtcgatcttgtt |
489 |
Q |
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| T |
7879458 |
ttagttttcttgtgatttctggttcaatcacagtcgattttgtt |
7879415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 370 - 489
Target Start/End: Original strand, 8588655 - 8588774
Alignment:
| Q |
370 |
aagagagttaattgctgctggatcatgacgagattgcaagataaaggttttgtttccagacaattccttctgtgctttagttttcttatgatttctggtt |
469 |
Q |
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| T |
8588655 |
aagagaggtaatcgttactggatcatgacgaaattgcaagataaaggttttgtttccaaacaatttcttctgtgctttagttttcttgcggtttctggtt |
8588754 |
T |
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| Q |
470 |
caatcacagtcgatcttgtt |
489 |
Q |
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| T |
8588755 |
aaatcacagtcgattttgtt |
8588774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 205
Target Start/End: Complemental strand, 7880331 - 7880221
Alignment:
| Q |
101 |
tatcttcataatataatatatagtccatatgcaaaagtagcatatgtgaaaatataacctta------ggctccaccttccaatgtcatgcaaagtaatg |
194 |
Q |
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| T |
7880331 |
tatcttcatattatactatatagtccatatgcaaaagtagcatctgtaaaaatatagcctcaataaaaggctccaccttccaatgccatgcaaagtaatg |
7880232 |
T |
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| Q |
195 |
aaattagaaag |
205 |
Q |
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| T |
7880231 |
aaattagaaag |
7880221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 7880144 - 7880084
Alignment:
| Q |
225 |
atattgctcatgatcatgcataaagatactcatgcacacagaaatagaaccaagaggcaac |
285 |
Q |
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| T |
7880144 |
atattgctcatgatcatgcataaagagactcatgcacacagaaacagaaccaagaggcaac |
7880084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 7881246 - 7881188
Alignment:
| Q |
13 |
tagttcaagggaagataactgaattttaaggttggcctcgaccacatcttgggatgtag |
71 |
Q |
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| T |
7881246 |
tagttcaggggaagataactgaattttaaggttggcctcgaccacatcttgggaagtag |
7881188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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