View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5884-Insertion-4 (Length: 352)
Name: NF5884-Insertion-4
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884-Insertion-4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 33462205 - 33461866
Alignment:
| Q |
9 |
aatttatcatgattaatatgtaattgatatataaaatatttgcaggtttgataacatgttgtttaccatgcatcacatttggccaaattgcagaagttgt |
108 |
Q |
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| T |
33462205 |
aatttatcatgattaatatgtaattgatatataaaatatttgcaggtttgataacatgttgtttaccatgcatcacatttggccaaattgcagaagttgt |
33462106 |
T |
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| Q |
109 |
ggatgaaggacgtagttgtaagtacacaacattaaatacctatttttctatatatatatgtactcaaaatatgtatactttgattcatgatatttctaat |
208 |
Q |
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| T |
33462105 |
ggatgaaggacgtagttgtaagtacacaacattaaatacctatttttctatatatata----ctcaaaatatgtatactttgattcatgatattttgaat |
33462010 |
T |
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| Q |
209 |
taatgaatgcagcttgtgctatgcaaggatgtgtatacggtttactgatgaccattacatgtcattggctatactcatgtctttacagagagaaattgag |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33462009 |
taatgaatgcagcttgtgctatgcaaggatgtgtatacggtttactgatgaccattacatgtcattggctatactcatgtctttacagagagaaactgag |
33461910 |
T |
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| Q |
309 |
agcaaagtatggtttaccagcagaaccttgttgtgattgttgtg |
352 |
Q |
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| T |
33461909 |
agcaaaatatggtttaccagctgaaccatgttgtgattgttgtg |
33461866 |
T |
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