View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5884_high_10 (Length: 356)
Name: NF5884_high_10
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 33461873 - 33462205
Alignment:
| Q |
1 |
atcacaacaaggttctgctggtaaaccatactttgctctcaatttctctctgtaaagacatgagtatagccaatgacatgtaatggtcatcagtaaaccg |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33461873 |
atcacaacatggttcagctggtaaaccatattttgctctcagtttctctctgtaaagacatgagtatagccaatgacatgtaatggtcatcagtaaaccg |
33461972 |
T |
|
| Q |
101 |
tatacacatccttgcatagcacaagctgcattcattaattagaaatatcatgaatcaaagtatacatattttgagtacatatatatatagaaaaataggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33461973 |
tatacacatccttgcatagcacaagctgcattcattaattcaaaatatcatgaatcaaagtatacatattttgagta----tatatatagaaaaataggt |
33462068 |
T |
|
| Q |
201 |
atttaatgttgtgtacttacaactacgtccttcatccacaacttctgcaatttggccaaatgtgatgcatggtaaacaacatgttatcaaacctgcaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33462069 |
atttaatgttgtgtacttacaactacgtccttcatccacaacttctgcaatttggccaaatgtgatgcatggtaaacaacatgttatcaaacctgcaaat |
33462168 |
T |
|
| Q |
301 |
attttatatatcaattacatattaatcatgataaatt |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33462169 |
attttatatatcaattacatattaatcatgataaatt |
33462205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University