View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5884_high_14 (Length: 312)
Name: NF5884_high_14
Description: NF5884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5884_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 36300216 - 36299935
Alignment:
| Q |
19 |
atatacacctctttccaaccaactaatgtaatgtatacaattgatattatcctnnnnnnnctcaacaacaaggaatgtgactcatcacttagtagatcta |
118 |
Q |
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| T |
36300216 |
atatacacctctttccaaccaactaatgtaatgtatacaattgatattatcctaaaaaaactcaacaacaaggaatgtgactcatcacttagtagatcta |
36300117 |
T |
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| Q |
119 |
agtggaatttatacagcaaatttgcacaaaaattgtattacagaatgtattgttagaattcatctttgaatagcaaagatgatctcaaaattgcctcaca |
218 |
Q |
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| T |
36300116 |
agtggagtttatacagcaaatttgcacaaaaattgtattacaaaatgtattgttagaattcatctttgaatagaaaagatgatctcaaaattgcctcaca |
36300017 |
T |
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| Q |
219 |
catgctcttatagcataaaatcaaatggccacaatctggaacttcatgatcttgtatccaaggcagcttctatgaaacaaat |
300 |
Q |
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| T |
36300016 |
catgctcttatagcataaaatcaaatggccacaatctggaacttcatgatcttgtatccaaggcagcttccatgaaacaaat |
36299935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 36301600 - 36301525
Alignment:
| Q |
225 |
cttatagcataaaatcaaatggccacaatctggaacttcatgatcttgtatccaaggcagcttctatgaaacaaat |
300 |
Q |
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| T |
36301600 |
cttatagcatataatcaaatggccaccatctggaatttcatgatattgtatccaaggcatcttccatgaaacaaat |
36301525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 203 - 300
Target Start/End: Complemental strand, 36297387 - 36297290
Alignment:
| Q |
203 |
tcaaaattgcctcacacatgctcttatagcataaaatcaaatggccacaatctggaacttcatgatcttgtatccaaggcagcttctatgaaacaaat |
300 |
Q |
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| T |
36297387 |
tcaaaatagcctcacataaacccttgtagtatataatcaaatggccaccatctggaacttcatgatattgtatccatggtagcttccctgaaacaaat |
36297290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 36301745 - 36301696
Alignment:
| Q |
84 |
caacaaggaatgtgactcatcacttagtagatctaagtggaatttataca |
133 |
Q |
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| T |
36301745 |
caacaaggaatgagattcatcacttagtagatctaagtgaaatttataca |
36301696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 36301810 - 36301756
Alignment:
| Q |
20 |
tatacacctctttccaaccaactaatgtaatg---tatacaattgatattatcct |
71 |
Q |
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| T |
36301810 |
tatacacctcttctcaatcaactaatgtaatgatgtatacaattgatattatcct |
36301756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 202 - 300
Target Start/End: Original strand, 48299087 - 48299185
Alignment:
| Q |
202 |
ctcaaaattgcctcacacatgctcttatagcataaaatcaaatggccacaatctggaacttcatgatcttgtatccaaggcagcttctatgaaacaaat |
300 |
Q |
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||||| |||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| |||||||||||| |||| | ||||||||||| |
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| T |
48299087 |
ctcaatattgcctcacacatgcccttatagcataaaatcagatggccactatttggaacttcatgatattgtatccaaggtagctgccatgaaacaaat |
48299185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 48298892 - 48298931
Alignment:
| Q |
29 |
ctttccaaccaactaatgtaatgtatacaattgatattat |
68 |
Q |
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| T |
48298892 |
ctttccaaccaactaatgtaatgtatacaattgatattat |
48298931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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